BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg898994

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G16140.1 | Symbols:  | transposable element gene | chr2:7005...   150    4e-36


> AT2G16140.1 | Symbols:  | transposable element gene | chr2:7005823-7008272 
FORWARD LENGTH=2450
Length=2450

 Score =  150 bits (81),  Expect = 4e-36
 Identities = 99/108 (92%), Gaps = 0/108 (0%)
 Strand=Plus/Plus

Query  1    ATGGATTCATATCCATATAGTCATGGATCAGGCTTTGTGAACCTCTTAACTAGTCAACAA  60
            |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  823  ATGGATCCATATCCATATAGTCATGGATCAGGTTTTGTGAACCTCTTAACTAGTCAACAA  882

Query  61   GAGGTTCACAATCTAGAAGCCAATCCGTATGATGATGTCCCTGTCTTT  108
            |||||||||| | | ||| ||||||||| ||||||||| ||| |||||
Sbjct  883  GAGGTTCACACTTTGGAAACCAATCCGTGTGATGATGTTCCTATCTTT  930



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9953014302


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5