BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899041
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11710.1 | Symbols: ATKRS-1 | lysyl-tRNA synthetase 1 | chr3... 1123 0.0
AT3G30817.1 | Symbols: | pseudogene, similar to LYSYL tRNA SYN... 398 1e-109
AT3G30813.1 | Symbols: | pseudogene, similar to Lysyl-tRNA syn... 139 7e-32
AT3G30812.1 | Symbols: | pseudogene, similar to lysyl-tRNA syn... 110 6e-23
> AT3G11710.1 | Symbols: ATKRS-1 | lysyl-tRNA synthetase 1 | chr3:3702169-3705714
REVERSE LENGTH=2172
Length=2172
Score = 1123 bits (608), Expect = 0.0
Identities = 1288/1607 (80%), Gaps = 84/1607 (5%)
Strand=Plus/Plus
Query 1 ATGGAGGCAAAGCAATATTTTGAGAACAGATTGATGTATCTTGCAGCAAAGaa-aaaaaa 59
||||| |||| |||||| | |||||||||||||| |||||||| || |||| |||
Sbjct 354 ATGGATGCAACGCAATACTATGAGAACAGATTGAAATATCTTGCGGCTGAGAAGGCTAAA 413
Query 60 GGGAGAGAATCCATACCCACACAAGTT-TTTAGTTTCCATGTC-AATCTCTGAATTCATT 117
||| ||||||||||| || |||||||| | || || ||||| | || || ||| ||||
Sbjct 414 GGG-GAGAATCCATATCCTCACAAGTTCGCT-GTGTCAATGTCGATTC-CTAAATACATT 470
Query 118 GAAAAGTATACTACTTT-AAGCAACGGAGACCATGTTGAAGACGAC-CAAGTTTCTCTAG 175
|| | |||| || ||| || ||| ||||| ||||||||| ||| | | | ||| |||
Sbjct 471 GAGACGTATGGTAGTTTGAA-CAATGGAGATCATGTTGAAAACG-CTGAGGAGTCTTTAG 528
Query 176 CTGGACGGATAATGAGCAGGAGATCTTCCTCTAGCAAGCTTTTCTTCTATGATTTACATA 235
|||| ||||||||||||| | ||||||||||| |||||| |||||||||||| ||||
Sbjct 529 CTGGGCGGATAATGAGCAAGCGATCTTCCTCTTCCAAGCTCTTCTTCTATGATCTACA-C 587
Query 236 ATTG-T-AGTTCTAGGGTCCAAGTTACAGTTGATGCAAGTAAGTCAGAATTAGATGAAGC 293
|| | | ||| | ||||||||| | | ||||||||||||||||| ||| ||||||||
Sbjct 588 GGTGATGATTTC-AAGGTCCAAGTCATGGCTGATGCAAGTAAGTCAGGATTGGATGAAGC 646
Query 294 TGAG-T-TTACGAGGGTCCATGCTAATGTTAAGCATGGAGATATTGTCGGTTTCACTGGA 351
|||| | ||| | | ||||| | |||| ||||| ||| |||||||| || ||| |||
Sbjct 647 TGAGTTCTTA--AAGCTCCATTCGAATGCTAAGCGTGGTGATATTGTTGGAGTCATTGGG 704
Query 352 TTTCCAGGAAAAACTAAAAGGGGAGAGCTAAGTATC-TTCCCACGATCGTTTACTGTGT- 409
||||||||||||||||| |||||||| | |||||| ||||| ||||| |||| | | |
Sbjct 705 TTTCCAGGAAAAACTAAGAGGGGAGAATTGAGTATCTTTCCC-CGATCATTTATTCT-TC 762
Query 410 TGTCTCATTGCCTCCACATGTTG-C-A-AAAGCCTAG-TCCTGGTCTTG---AG---CCT 459
|||| ||||||||||||||| || | | |||| || | | || | || || |||
Sbjct 763 TGTCCCATTGCCTCCACATGATGCCGAGAAAGGCT-GATAATGTTAATGCAAAGAAACCT 821
Query 460 --AA-CTGGGTTCCAGG--AAAGCCTAGAACTCCAGAAACTTATATTCTTAAAGATCAGG 514
|| |||||||||||| ||| | |||| ||| ||| | ||| |||| ||||| ||||
Sbjct 822 GAAATCTGGGTTCCAGGTCAAA--CGAGAAATCCTGAAGCATATGTTCTGAAAGACCAGG 879
Query 515 AAATTC--GGTATCGCCAGCGTTACCTTGACT-TGATGCTGAACGAT-GAGG-TCTGCCA 569
|| || | ||||| |||||| | ||||| | |||| |||||| | |||| || | ||
Sbjct 880 -AA-TCAAGATATCGTCAGCGTCATCTTGA-TATGATTTTGAACG-TGGAGGTTC-GTCA 934
Query 570 GATATTCATGACCAAAACTAAGATAATCAAATACATTAGAAGATACCTTGATGATC-TTG 628
|||||||| ||| | | |||| || ||| || | | |||| ||| || | |
Sbjct 935 GATATTCAGGACTAGAGCTAAAATCATCTCCTATGTCCGCAGATTCCTCGA-CAACAAAA 993
Query 629 ATTTCTTGGAGGTTGAGACACCTATGATGAGTATGATTGCTGGTGGAGCAGCTGC-ACGT 687
||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 994 ATTTCTTGGAGGTCGAGACACCTATGATGAACATGATTGCTGGTGGAGCAGCTGCTA-GA 1052
Query 688 CGATTTGCGACCCATCACAATGATATGA-ATATGAAGATGTTCATGCGTATCACACCAGA 746
| |||| ||| |||||||||||| | | |||||| | ||| |||||| ||| |||| ||
Sbjct 1053 CCTTTTGTGACACATCACAATGATCT-AGATATGAGGCTGTACATGCGAATCGCACCTGA 1111
Query 747 ACTCTATCTTAAGCAGCTTGTTGTTGGCGGTTTTGAGCGTGTTTACGAGATAGGAAAGCA 806
||||||||| ||||| ||| ||||||| || || || |||||||||||||||||||||||
Sbjct 1112 ACTCTATCTCAAGCAACTTATTGTTGGTGGCTTGGAACGTGTTTACGAGATAGGAAAGCA 1171
Query 807 GTTCAGAAATGAGGGTATTGACTTGACACACAATCCAGAGTTCACCACCTGCGAGTTCTA 866
|||||||| |||||||| ||| |||| |||||||| ||||||||||| |||||||||||
Sbjct 1172 ATTCAGAAACGAGGGTATAGACCTGACCCACAATCCGGAGTTCACCACTTGCGAGTTCTA 1231
Query 867 TATGGCTTTCGCAGACTACAATGACTTGATGGAGATGTCTGA-GAAATTGCTCAGTGGTA 925
||||||||| ||||||||||||||| ||||||| ||| |||| | | || | ||||| |
Sbjct 1232 TATGGCTTTTGCAGACTACAATGACCTGATGGAAATGACTGAGGTTA-TGTTGAGTGGCA 1290
Query 926 TGGTGAAGGAATTAACAGGGGGCTATAAAATCAAATACCACGCTAATGGGTATGATAAGG 985
|||| |||||||||||||| || ||||||||||| || | |||||||||||||| ||||
Sbjct 1291 TGGTTAAGGAATTAACAGGTGGTTATAAAATCAAGTATAATGCTAATGGGTATGACAAGG 1350
Query 986 AGCCAATTGAAATCGACTTCACTCCTCCATTCAGGAGGATTGAGATGAT-GGTAGAGTTA 1044
| ||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||||
Sbjct 1351 ATCCAATTGAAATCGACTTTACTCCACCATTCAGGAGGATTGAGATGATAGG-AGAGTTA 1409
Query 1045 GACAAGGTGGCCAACCTTAATATACCAAAAGATTTGGCTAGCTG-GGAAGCTAACAAGTA 1103
|| ||||| || || || |||||||||||||| ||||||||| | ||||||||||||||
Sbjct 1410 GAGAAGGTTGCTAAGCTCAATATACCAAAAGACTTGGCTAGC-GAAGAAGCTAACAAGTA 1468
Query 1104 TCTGATTGATGCATGTGAGAGGTTTGATGTCACATGCCCACCTCCTAAAACGACAGCTCG 1163
||||||||||||||||| |||||||||||||| |||||| |||||| | || ||||||||
Sbjct 1469 TCTGATTGATGCATGTGCGAGGTTTGATGTCAAATGCCCTCCTCCTCAGACAACAGCTCG 1528
Query 1164 TTTGTTAGAGAAACTTGTTGGACACTTTCTGGAAGTGACGTGTGTTAACCCCACTTTCAT 1223
| ||||||| |||||||||||| | ||||||||| ||| ||||| ||||| ||||||||
Sbjct 1529 TCTGTTAGATAAACTTGTTGGAGAATTTCTGGAACCGACATGTGTGAACCCAACTTTCAT 1588
Query 1224 AATGAACCAACCCAAGATTATGAGTCCATTGGCAAAATGTCACAGATCCAACGAGTTCCT 1283
|| ||||| ||| |||| |||||||| ||||| ||||| |||||||| || |||| |
Sbjct 1589 CATCAACCAGCCCGAGATCATGAGTCCTTTGGCTAAATGGCACAGATCGAA-GAGTGGAT 1647
Query 1284 -GACTGA-ACGATTTGAGTTGTTCGTCAACCAACACGAACTTTGCAATGCCTACACTGAG 1341
||| || | |||| ||| ||||| ||||| |||| ||||| |||||||||||||| |||
Sbjct 1648 TGACAGAGA-GATTCGAGCTGTTCATCAACAAACATGAACTCTGCAATGCCTACACGGAG 1706
Query 1342 TTGAATGATCCTGTGGAACAGCGGCAGCGCTTTGCTGATCAGCTCAAGGATCGAC-GATA 1400
| || |||||||||| |||||| ||||| ||||||||||||||||||||||||| | |
Sbjct 1707 CTAAACGATCCTGTGGTACAGCGCCAGCGTTTTGCTGATCAGCTCAAGGATCGACAG-TC 1765
Query 1401 TGGAGATGATGAAGCTATGGAT---GA-GA--CGTTTTGCACGGCTCTT-GAACATGGAC 1453
|||||| |||||||| |||| | || || | ||||| | ||| || ||| ||||
Sbjct 1766 TGGAGACGATGAAGCGATGGCTTTAGATGAAACATTTTGTAATGCT-TTAGAATATGGGT 1824
Query 1454 TGCCTCCTACAGGTGGTTGGGGTATG-GGAATAGACAGGCT-TGTTATG-TTGCTT-ACC 1509
|| ||||||||||||| ||||| || ||||||||||| || | | ||| || || |||
Sbjct 1825 TGGCTCCTACAGGTGGCTGGGG-ATTAGGAATAGACAGACTCTCT-ATGCTT--TTGACC 1880
Query 1510 GACTCACAGAACATTAAGGAGGTTCTCCTCTTCCCAACAATGAAGCC 1556
||||||| |||||| ||||||||||| ||||||| |||||| |||
Sbjct 1881 GACTCACTGAACATCAAGGAGGTTCTTTTCTTCCCGGCAATGAGGCC 1927
> AT3G30817.1 | Symbols: | pseudogene, similar to LYSYL tRNA SYNTHETASE,
blastp match of 69% identity and 1.2e-35 P-value
to GP|19068778|emb|CAD25246.1||AL590444 LYSYL tRNA SYNTHETASE
{Encephalitozoon cuniculi} | chr3:12511289-12511589 REVERSE
LENGTH=301
Length=301
Score = 398 bits (215), Expect = 1e-109
Identities = 264/287 (92%), Gaps = 5/287 (2%)
Strand=Plus/Plus
Query 646 ACACCTATGATGAGTATGATTGCTGGTGGAGCAGCTGCACGTCGATTTGCGACCCATCAC 705
||||||||||||| |||||||||||||||||||| || ||||| |||||| ||| |||||
Sbjct 2 ACACCTATGATGAATATGATTGCTGGTGGAGCAGTTGAACGTCCATTTGCAACCTATCAC 61
Query 706 AATGATATGAATATGAAGATGTTCATGCGTATCACACCAGAACTCTATCTTAAGCAGCTT 765
||||||||||| || |||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 62 AATGATATGAAAATTAAGATGTTCATGCGTATCGCACCAGAACTCTATCTTAAGGAGCTT 121
Query 766 GTTGTTGGCGGTTTTGAGCGTGTTTACGAGATAGGAAAGCAGTTCAGAAATGAGGGTATT 825
||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct 122 GTTGTTGGCGGTTTTGACCGTGTTTACGAGATTGGAAAGCAATTCAGAAATGAGGGTATT 181
Query 826 GAC-T----TGACACACAATCCAGAGTTCACCACCTGCGAGTTCTATATGGCTTTCGCAG 880
||| | ||||||||||||||||||||||| ||||||||||||||| ||||| |||||
Sbjct 182 GACATGACATGACACACAATCCAGAGTTCACCTCCTGCGAGTTCTATAAGGCTTACGCAG 241
Query 881 ACTACAATGACTTGATGGAGATGTCTGAGAAATTGCTCAGTGGTATG 927
|||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 242 ACTACAATGACTTGATGGAGATGTGTGAGAATTTGCTCAGTGGTATG 288
> AT3G30813.1 | Symbols: | pseudogene, similar to Lysyl-tRNA synthetase
(EC 6.1.1.6) (Lysine--tRNA ligase) (LYSRS). (Tomato),
blastp match of 43% identity and 1.5e-23 P-value to SP|Q43776|SYK_LYCES
Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA
ligase) (LYSRS). (Tomato) {Lycopersicon esculentum} |
chr3:12508310-12508892 REVERSE LENGTH=583
Length=583
Score = 139 bits (75), Expect = 7e-32
Identities = 83/87 (95%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 1177 CTTGTTGGACACTTTCTGGAAGTGACGTGTGTTAACCCCACTTTCATAATGAACCAACCC 1236
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 413 CTTGTTGGACACTTTCTGGAAGTGACGTGTGTTAACCCTACTTTCATAATGAACAAACCC 472
Query 1237 AAGATTATGAGTCCATTGGCAAAATGT 1263
|||||||||||||| |||| |||||||
Sbjct 473 AAGATTATGAGTCCCTTGGGAAAATGT 499
> AT3G30812.1 | Symbols: | pseudogene, similar to lysyl-tRNA synthetase,
blastp match of 58% identity and 2.1e-10 P-value
to GP|10798642|emb|CAC12821.1||AJ299251 lysyl-tRNA synthetase
{Nicotiana tabacum} | chr3:12502459-12502638 REVERSE LENGTH=180
Length=180
Score = 110 bits (59), Expect = 6e-23
Identities = 63/65 (97%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 1256 CAAAATGTCACAGATCCAACGAGTTCCTGACTGAACGATTTGAGTTGTTCGTCAACCAAC 1315
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 5 CAAAATGTCACAGATCCAACGAGTTCCTTACTGAACGATTTGAGTTGTTCGTCAACCAAC 64
Query 1316 ACGAA 1320
| |||
Sbjct 65 ATGAA 69
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80170270365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5