BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899051
Length=1950
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60840.1 | Symbols: MAP65-4 | microtubule-associated protein... 3088 0.0
> AT3G60840.1 | Symbols: MAP65-4 | microtubule-associated protein
65-4 | chr3:22477573-22480463 REVERSE LENGTH=1947
Length=1947
Score = 3088 bits (1672), Expect = 0.0
Identities = 1863/1955 (95%), Gaps = 13/1955 (1%)
Strand=Plus/Plus
Query 1 ATGGGAGAGACTGAGGATGAAAAAGATGCTGCTTTGGCTGATATCGAGAAGGAGTGTCTC 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGGAGAGACTGAGGATGAAAAAGATGCTTCTTTGGCTGATATCGAGAAGGAGTGTCTC 60
Query 61 TCGGTTTATAAGCGAAAAGTCGAAGAGGCTAGTCGGTGTAAAGCAAATTTGCTGAAAGAA 120
||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||||||
Sbjct 61 TCGGTTTATAAGCGAAAGGTCGAGGAGGCTAGTCGGGGTAAAGCGAATTTGCTGAAAGAA 120
Query 121 ATCGCTGTTGGAAGAGCAGAAATTGCAGCCATTGGCTCTTCTATGGGTGGACAAGAGATT 180
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 ATCGCTGTTGGCAGAGCAGAAATTGCAGCTATTGGCTCTTCTATGGGTGGACAAGAGATT 180
Query 181 CACGAAAGTTCTAACAGCAGGTTAGGAGAAAACTTGAAGGAGGAGCTTGAGAACGTTAAT 240
| | |||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 181 --C---A-TTCTAACAGCAGGTTAGGAGAAAACTTGAAAGAGGAGCTTGAGAATGTTAAT 234
Query 241 GTTCAATTAGAGGGACTGCGCAAGAA-GAAAGCTGAGAGAATGACTCGGTTTAATGAAGT 299
|| ||||| || ||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 235 GTGCAATTGGATGGACTGCGCAA-AAGGAAAGCTGAGAGAATGATTCGGTTTAATGAAGT 293
Query 300 TATCGATCAGTTACTGAAGTTGTCATTTCAACTTGGAAATCCAACAGATTATCTGAAGAA 359
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 294 TATCGATCAGTTACTGAAGTTGTCACTGCAACTTGGAAATCCAACAGATTATCTGAAGAA 353
Query 360 TTTTGCTGCTGAGGAGACCGATATTTCGCTTCAGAAGTTGGAGGAATTGCGTAGCCAATT 419
||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||
Sbjct 354 GTTTGCTGCTGAAGAGACCGATCTTTCGCTTCAGAGGTTGGAGGAATTGCGTAGCCAGTT 413
Query 420 GGGTGAACTCCAGAATGAAAAGAGCAAAAGATTGGAAGAGGTAGAGTGTTTGCTGAAAAC 479
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GGGTGAGCTCCAAAATGAAAAGAGCAAAAGATTGGAAGAGGTAGAGTGTTTGCTGAAAAC 473
Query 480 GCTGAACTCGTTGTGCTCGGTTCTTGGTGAAGATTT-TATGGACATGATAAGAGGGATAC 538
||| |||||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 474 GCTTAACTCGTTGTGCTCGGTTCTTGGTGAAGATTTCAAAGG-CATGATAAGAGGGATAC 532
Query 539 ATTTATCTCTGGTTGATTCTAACACCAGAGATGTGAGCAGAAGTACTCTTGATAAGTTGG 598
||| ||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 533 ATTCATCTCTGGTTGATTCCAACACTAGGGATGTGAGCAGAAGTACTCTTGATAAGTTGG 592
Query 599 ATATGATGATTGTGAATTTACGAGAGGTCAAGTTACAGCGAATGCAGAAGGTTCAAGATC 658
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 593 ATATGATGATTGTGAATTTACGAGAGGCCAAGTTACAGCGAATGCAGAAGGTTCAAGATC 652
Query 659 TTGCAGTCTCTTTGTTGGAACTCTGGAATCTGCTGGACACGCCTGCGGAAGAGCAAAAGA 718
||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TTGCAGTGTCCTTGTTGGAGCTCTGGAATCTGCTGGACACGCCTGCGGAAGAGCAAAAGA 712
Query 719 TATTTCACAATGTCACCTGCAGCATCGCTTTGTCTGAGTCTGAAGTCACGGAGGCCAACA 778
|||||||||||||||| || |||||||||||| ||||||||||| | || ||||||||||
Sbjct 713 TATTTCACAATGTCACATGTAGCATCGCTTTGACTGAGTCTGAAATAACTGAGGCCAACA 772
Query 779 TACTTTCTGTTGCTTCCATTAAACGCGCTGAGGATGAAGTCATTAGGCTTAGCAAGCTCA 838
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 773 TACTTTCTGTTGCTTCCATTAAACGCGTTGAGGATGAAGTCATTAGGCTTAGCAAGATCA 832
Query 839 AAATAACTAAGATCAAAGAGGTGATACTAAGGAAGAAGCTTGAGCTTGAGGAAATATCAA 898
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 833 AAATAACTAAGATCAAAGAGGTGATACTGAGGAAGAGGCTTGAGCTTGAGGAAATATCAA 892
Query 899 GGAAGATGCACATGGCCACCGAAGTTCTTAAATCAGAAAACTTTTCATTTGAAGCTATAG 958
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 893 GGAAGATGCACATGGCCACCGAAGTTCTTAAATCAGAAAACTTTTCAGTTGAAGCTATAG 952
Query 959 AATCTGGTGTCAAGGATCCTGAGCAGTTGTTAGAGCAAATTGATTCCGAGATTGCAAAGG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 AATCTGGTGTCAAGGATCCTGAGCAGTTGTTAGAGCAAATTGATTCCGAGATTGCAAAGG 1012
Query 1019 TCAAAGAGGAAGCTTCAAGCAGGAAGGAGATTCTTGAAAAAGTGGAGAAATGGATGTCAG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TCAAAGAGGAAGCTTCAAGCAGGAAGGAGATTCTTGAAAAAGTGGAGAAATGGATGTCAG 1072
Query 1079 CTTGTGAAGAAGAATCTTGGCTCGAAGAGTACAATCGGGATGATAACCGCTACAACGCTG 1138
||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1073 CTTGTGAAGAAGAGTCTTGGCTGGAAGAGTACAATCGGGATGATAACCGGTACAACGCTG 1132
Query 1139 GAAGAGGAGCTCATCTTACATTGAAGCGTGCGGAAAAAGCCCGTGTACTTGTCAATAAAC 1198
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1133 GAAGAGGAGCTCATCTTACATTGAAGCGTGCAGAAAAAGCCCGTTTACTTGTCAATAAAC 1192
Query 1199 TTCCTGGGATGGTGGAGGCTTTAACCGCCAAAGTCACTGCTTGGGAGGATGAAAGAGGAA 1258
|||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1193 TTCCTGGGATGGTGGAAGCTTTGACCGCCAAAGTCACTGCTTGGGAGAATGAAAGAGGAA 1252
Query 1259 ATGAATTCTTATATGATGGTGTCCGAGTTTTATCGATGCTTGATCAGTACAAGACTCTAT 1318
||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||| |||
Sbjct 1253 ATGAATTCTTATATGATGGGGTCCGAGTCTTATCGATGCTTGGTCAGTACAAGACTGTAT 1312
Query 1319 GGGAAGAGAAAGAGCATGAAAAACAGAGACAGAGAGATCTGAAGAAACTCCATGGACAAC 1378
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1313 GGGAAGAGAAAGAGCATGAAAAACAGAGACAGAGAGATATGAAGAAACTTCATGGACAAC 1372
Query 1379 TCATAACAGAACAAGAATCCCTTTATGGGTCTAAACCAAGCCCAAATAAAAGCGGAAAGA 1438
|||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 TCATAACAGAGCAAGAAGCTCTTTATGGGTCTAAACCAAGCCCAAATAAAAGCGGAAAGA 1432
Query 1439 AACCACTGAGAACACCAGTAAACGCTGCCATGAACAGAAAACTCTCCCTTGGTGGTGCCA 1498
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1433 AACCACTGAGAACACCAGTAAATGCTGCCATGAACAGAAAACTCTCCCTTGGTGGTGCCA 1492
Query 1499 TGCTTCATCAAAGCTTGAAGCCTGAGAAGGCAACACTCAATAGCAGAAGGTCGAATTACT 1558
|||||||||||||||| |||| ||||||||||||||||||||||| |||| |||| ||||
Sbjct 1493 TGCTTCATCAAAGCTTAAAGCATGAGAAGGCAACACTCAATAGCAAAAGGACGAAGTACT 1552
Query 1559 ATGACCAGAACGCTACTAATAGAAGAGATTCAGCTCTTCCAACTCCTTCAGGAAGGAGAA 1618
|||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct 1553 ATGACCAGAACGCTACTAGTAGAAGAGATTCAGCTCTTCCAACTCTTTCAGGGAGGAGAA 1612
Query 1619 ACTCAGAACTTCCTGGTCGTATCAGATCAAAGAACGTTTCGGTTGCAGGAAAAGCTGCGA 1678
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1613 ACTCAGAGCTTCCTGGTCGTATCAGATCAAAGAACGTTCCGGTTGCAGGAAAAGCTGCGA 1672
Query 1679 GATCTCCAATGCTTAGGAAGCCTCTTTCACCTGTCACTTCCAATATCTTGAATTCCCCAG 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 GATCTCCAATGCTTAGGAAGCCTCTTTCACCTGTCACTTCCAATATCTTGAATTCCCCAG 1732
Query 1739 AAGATCA-CA-A-GGATGCTTACACAACAAAGGAGAGAATCTTGACACCTAAAACCAACG 1795
||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 AAGATCATCACAAGGATGCTTACACAACAAAGGAGAGAATCTTGACACCTAAAACCAACG 1792
Query 1796 AAGAAAACAAAAGGGCTGTTCCAACAACTCCGGCAGCTTCAGTCGCTATGACAGAGGCAA 1855
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1793 AAGAAAAGAAAAGAGCTGTTCCAACAACTCCTGCAGCTTCAGTCGCTATGACAGAGGCAA 1852
Query 1856 CAACGCCGTTCACTCCTGCTGTGGAGAAGAGAATGGATGAGGAAGACGTTGTTGTTGAGT 1915
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1853 CAACGCCGTTCACTCCTGCTGTGGAGAAGAGAATGGATGAGGAAGACGTTATTGTTGAGT 1912
Query 1916 ACTCGTTTGAAGAGGTTAGAGCCGGTTTTCGCTAA 1950
| ||||||||||||||||| ||||||||| |||||
Sbjct 1913 ATTCGTTTGAAGAGGTTAGGGCCGGTTTTTGCTAA 1947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96585848580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5