BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899056

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G60890.2 | Symbols: ZPR2 | protein binding | chr3:22497024-2...   462    7e-130


> AT3G60890.2 | Symbols: ZPR2 | protein binding | chr3:22497024-22497475 
REVERSE LENGTH=354
Length=354

 Score =  462 bits (250),  Expect = 7e-130
 Identities = 299/322 (93%), Gaps = 5/322 (2%)
 Strand=Plus/Plus

Query  1    ATGTGTCTGACATCTTCAGAGCCACCATTCCCAGACACTCACACACCAACCATGAGATCA  60
            |||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||| 
Sbjct  34   ATGTGTCTGACAACTTCAGAGCCACCATTCCCAGACACTGACACACCAACTATGAGATC-  92

Query  61   T-CTTCGTACCACAACAAACATAAATCTAAGACACAATCCCATCTTCGTATCCTTAATCT  119
            | |||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  93   TGCTTCGTACCATATCAAACATAAATCTAAGACACAAACCCATCTTCGTATCCTTAATCT  152

Query  120  CA-C--CAGGAGAAGAAGATTACTGAAGGAACAGAAGGTGATGGAGATGAGAAACTTGAA  176
            || |  |||||| ||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct  153  CACCAGCAGGAGGAGAAGATTACTGAAGGAACAGAAGGAGATGGAGATGAGGAACTTGAA  212

Query  177  GCTTTTCGTAGCGAATCAAAGCATCATGCGAGAGAATGAAGCTTTAAAAAAGAAAGCTCT  236
            ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  213  GCTTTTCGTAGAGAATCAAAGCATCATACGAGAGAATGAAGCTTTAAAAAAGAAAGCTCT  272

Query  237  TCTTCTCCACCAAGAAAACAATGCTCTGTTTGCTCTGCTTCATCCAAAACCCTCCCCTGT  296
            |||||||||||| ||||||||||||||||||||||||||||| ||||||  |||||||||
Sbjct  273  TCTTCTCCACCATGAAAACAATGCTCTGTTTGCTCTGCTTCACCCAAAATACTCCCCTGT  332

Query  297  TGCCACCTCCTTGCTTCTGTGA  318
            | | ||||||||||||| ||||
Sbjct  333  TTCAACCTCCTTGCTTCAGTGA  354



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14778718206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5