BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg899060 Length=1557 Score E Sequences producing significant alignments: (Bits) Value AT3G61035.1 | Symbols: | Cytochrome P450 superfamily protein |... 887 0.0 AT3G60955.1 | Symbols: CYP76C8P | a cytochrome P450 pseudogene.... 725 0.0 > AT3G61035.1 | Symbols: | Cytochrome P450 superfamily protein | chr3:22592252-22593649 REVERSE LENGTH=1023 Length=1023 Score = 887 bits (480), Expect = 0.0 Identities = 674/759 (89%), Gaps = 48/759 (6%) Strand=Plus/Plus Query 335 AGACGGTTCGAGCCTTCGGCCACCACGACGTCTCCATAGCATGGCTACCTTCGACGTCGT 394 |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 297 AGACGGTTCGAGCCTTCGGCCACCACGAAGTCTCCGTAGCATGGCTACCTTCGACGTCGT 356 Query 395 CTCGTTGGAGGTTATGGAGGAAGGTACTGGCGACAAAACTTTTCTCACGGGAGCGTCACA 454 ||||||||||||||| || | |||||||||||||||||||||||||||||| ||||| Sbjct 357 CTCGTTGGAGGTTAT---GG-A--TACTGGCGACAAAACTTTTCTCACGGGAGCATCACA 410 Query 455 AAGCCACGAAGTCCGTACGGTCGAAGAAAGCGAAAGAACTTATAACA-TTCATTATCGAA 513 ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| || Sbjct 411 AAGCCACGAAGTCCGTAAGGTCGAAGAAAGCGAAAGAACTTGTAACATTTCATTATCCAA 470 Query 514 AGAGGCGAACGAGGCTTCTCCGTCGACATTG--C-T-CGTGCTTGCTTCATCACGTCGCT 569 ||||||||||||||||||||||||||||||| | | ||||| ||||||||||||||||| Sbjct 471 AGAGGCGAACGAGGCTTCTCCGTCGACATTGCTCGTACGTGCGTGCTTCATCACGTCGCT 530 Query 570 TAATGTA-ATCTCAAACGTTGTGTTTTCGATCGACTTAGGTGGTTACGACCCGAGAGCCT 628 ||||||| | ||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 531 TAATGTAGA-CTCAAACGTTGTGTTTTCGATCGACTTAGGTAGTTACGATCCGAGAGCCT 589 Query 629 CCACGGAGCTCCAGGACTCATTGTCTCGTATGATGAAAATAATGGGGAAACCAAACCTCG 688 ||||||||||||| ||||| ||||||||||||||||||| |||||||||||| ||||||| Sbjct 590 CCACGGAGCTCCAAGACTCCTTGTCTCGTATGATGAAAACAATGGGGAAACCGAACCTCG 649 Query 689 TAAACTATTTTCCGTCTCTTGAGTTTCTTGA-CATACAAGGTATCCGGAAAGAGATGAAG 747 ||| |||||||||||||||||||||||||| | |||| ||||||||||||||||||||| Sbjct 650 CAAATTATTTTCCGTCTCTTGAGTTTCTTGATC-TACAGGGTATCCGGAAAGAGATGAAG 708 Query 748 G---TGTGTTCGGAGAGGTTGTTTCAGATTTTTCAAGGGCTCGTCAATGCTCGAATCGCG 804 | ||||||||||||||||||||||| |||||||||| ||| || ||||||| |||||| Sbjct 709 GTCATGTGTTCGGAGAGGTTGTTTCAGGTTTTTCAAGGCCTCATCGATGCTCGGATCGCG 768 Query 805 GAAAGATCATCACAGACTGGACCTAGA---GATGCATTGAGAGGTGATTTGTTGGATTCA 861 ||||||||||| |||| |||||||||| |||||| ||||||| ||||||||||||||| Sbjct 769 GAAAGATCATCGCAGATTGGACCTAGAGTCGATGCACTGAGAGGCGATTTGTTGGATTCA 828 Query 862 CTAATCGATCTTATTCAAGAAGAGGGATCGGAAGTCGACATGAATGATATCAACCACTTT 921 | |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 829 GTGATCGATCTTATTCAAGAAGAGGGATCGGAAGTCGACATGAATGATATCAA--AC--- 883 Query 922 TTATGCGACTTGTTTATTGCTGGAACGGAAACGAACTCTACCACAGTGGAATGGGCATTG 981 | | || ||||| || | || || | ||||||| ||||||||| ||||| Sbjct 884 --A--C---TT-TTTAT-GC---A-CG-AA-C----TCTACCATTGTGGAATGGACATTG 924 Query 982 GCTGAGCTACTTCGTAACCCAG-AGGCTATGGCTAACGCTAAAGTCGAGATCAACTTTAT 1040 ||||||||||||| ||||||| || ||||||||||| ||||||| |||| ||||||||| Sbjct 925 GCTGAGCTACTTCATAACCCAATAG-CTATGGCTAACACTAAAGTTGAGACCAACTTTAT 983 Query 1041 TGTTGGCCCAAACCGTTACGTTCGTGACTCCAATCTCTT 1079 |||||||| ||| ||||||||| |||||||||||||||| Sbjct 984 TGTTGGCC-AAATCGTTACGTTTGTGACTCCAATCTCTT 1021 Score = 455 bits (246), Expect = 6e-127 Identities = 275/289 (95%), Gaps = 2/289 (1%) Strand=Plus/Plus Query 1 ATGAAGCACACCATAGCTCTAGCTCTGCTTTTGATACTTGGCTTCTTTTTAACATATCTT 60 ||||||||||| ||||||||||||||||||||||||||| ||||| |||| || |||||| Sbjct 7 ATGAAGCACACAATAGCTCTAGCTCTGCTTTTGATACTTAGCTTCCTTTTCACGTATCTT 66 Query 61 CTCCTTGTCGCTGTTAAATCACGACGACGGAGATCAAGC-CAACTGGCACTGCTTCCGGG 119 | |||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| Sbjct 67 ATTCTTGTCGCTGTTAAATCACGACGACGGAGATCAAGCTC-ACTGGCACTGGTTCCGGG 125 Query 120 ACCTCCGGGACCTTCGGGATGGCCCATAATCGGAAACCTTCTCCAGATCATCGGAAAAGC 179 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 126 ACCTCCCGGACCTTCGGGATGGCCCATAATCGGAAACCTTCTCCAGATCATCGGAAAAGC 185 Query 180 TCCTCACCGTTCACTTGCTGATCTCTCGAGAGTTTATGGACCAGTCATGAGTCTTAGGCT 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 186 TCCTCACCGTTCATTTGCTGATCTCTCGAGAGTTTATGGACCAGTCATGAGTCTTAGGCT 245 Query 240 TGGAAGTTTAGCCACAGTGGTCATTTCTTCACCAGATGCAGCAAGAGAG 288 |||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 246 TGGAAGTTTAACCAAAGTGGTCATTTCTTCACCAGATGCAGCAAGAGAG 294 > AT3G60955.1 | Symbols: CYP76C8P | a cytochrome P450 pseudogene. overlaps with a real gene on the other strand. | chr3:22529643-22532476 REVERSE LENGTH=2834 Length=2834 Score = 725 bits (392), Expect = 0.0 Identities = 482/523 (92%), Gaps = 15/523 (3%) Strand=Plus/Plus Query 419 TACTGGCGACAAAACTTTTCTCACGGGAGCGTCACAAAGCCACGAAGTCCGTACGGTCGA 478 |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 500 TACTGGCGACAAAACTTTTCTCACGGGAGCATCACAAAGCCACGAAGTCCGTAAGGTCGA 559 Query 479 AGAAAGCGAAAGAACTTATAACA-TTCATTATCGAAAGAGGCGAACGAGGCTTCTCCGTC 537 ||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||| Sbjct 560 AGAAAGCGAAAGAACTTGTAACATTTCATTATCCAAAGAGGCGAACGAGGCTTCTCCGTC 619 Query 538 GACATTG--C-T-CGTGCTTGCTTCATCACGTCGCTTAATGTA-ATCTCAAACGTTGTGT 592 ||||||| | | ||||| |||||||||||||||||||||||| | |||||||||||||| Sbjct 620 GACATTGCTCGTACGTGCGTGCTTCATCACGTCGCTTAATGTAGA-CTCAAACGTTGTGT 678 Query 593 TTTCGATCGACTTAGGTGGTTACGACCCGAGAGCCTCCACGGAGCTCCAGGACTCATTGT 652 ||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| |||| Sbjct 679 TTTCGATCGACTTAGGTAGTTACGATCCGAGAGCCTCCACGGAGCTCCAAGACTCCTTGT 738 Query 653 CTCGTATGATGAAAATAATGGGGAAACCAAACCTCGTAAACTATTTTCCGTCTCTTGAGT 712 ||||||||||||||| |||||||||||| ||||||| ||| ||||||||||||||||||| Sbjct 739 CTCGTATGATGAAAACAATGGGGAAACCGAACCTCGCAAATTATTTTCCGTCTCTTGAGT 798 Query 713 TTCTTGA-CATACAAGGTATCCGGAAAGAGATGAAGG---TGTGTTCGGAGAGGTTGTTT 768 ||||||| | |||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct 799 TTCTTGATC-TACAGGGTATCCGGAAAGAGATGAAGGTCATGTGTTCGGAGAGGTTGTTT 857 Query 769 CAGATTTTTCAAGGGCTCGTCAATGCTCGAATCGCGGAAAGATCATCACAGACTGGACCT 828 ||| |||||||||| ||| || ||||||| ||||||||||||||||| |||| ||||||| Sbjct 858 CAGGTTTTTCAAGGCCTCATCGATGCTCGGATCGCGGAAAGATCATCGCAGATTGGACCT 917 Query 829 AGA---GATGCATTGAGAGGTGATTTGTTGGATTCACTAATCGATCTTATTCAAGAAGAG 885 ||| |||||| ||||||| ||||||||||||||| | ||||||||||||||||||||| Sbjct 918 AGAGTCGATGCACTGAGAGGCGATTTGTTGGATTCAGTGATCGATCTTATTCAAGAAGAG 977 Query 886 GGATCGGAAGTCGACATGAATGATATCAACCACTTTTTATGCG 928 ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 978 GGATCGGAAGTCGACATGAATGATATCAAACACTTTTTATGCG 1020 Score = 564 bits (305), Expect = 1e-159 Identities = 385/421 (91%), Gaps = 16/421 (4%) Strand=Plus/Plus Query 1 ATGAAGCACACCATAGCTCTAGCTCTGCTTTTGATACTTGGCTTCTTTTTAACATATC-T 59 |||||||||||||||||||| ||||||||||||| |||| ||||| ||||||| |||| | Sbjct 1 ATGAAGCACACCATAGCTCTTGCTCTGCTTTTGACACTTAGCTTCCTTTTAACGTATCTT 60 Query 60 -T-C---TCC-TTGTCGCTGTTAAATCACGACGACGGAGATCAAG--C-CA----ACTGG 106 | | ||| |||||||||||||||||||||||||||||||||| | || ||||| Sbjct 61 CTCCTTGTCCGTTGTCGCTGTTAAATCACGACGACGGAGATCAAGCTCACAGCTCACTGG 120 Query 107 CACTGCTTCCGGGACCTC-CGGGACCTTCGGGATGGCCCATAATCGGAAACCTTCTCCAG 165 |||||||||||||||||| | |||||||||||||| ||| |||||||||||||||||||| Sbjct 121 CACTGCTTCCGGGACCTCTC-GGACCTTCGGGATGACCCGTAATCGGAAACCTTCTCCAG 179 Query 166 ATCATCGGAAAAGCTCCTCACCGTTCACTTGCTGATCTCTCGAGAGTTTATGGACCAGTC 225 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 180 ATCATCGGAAAAGCTCCTCACCGTTCACTTGCTGATTTCTCGAGAGTTTATGGACCAGTC 239 Query 226 ATGAGTCTTAGGCTTGGAAGTTTAGCCACAGTGGTCATTTCTTCACCAGATGCAGCAAGA 285 |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 240 ATGAGTCTTAGGCTTGGAAGTTTAACCAAAGTGGTCATTTCTTCACCAGATGCAGCAAGA 299 Query 286 GAGGTTCTGAAAACGCTTGACCATGTCTTATCTGGACGAACCTCTAGTGAGACGGTTCGA 345 |||||||| |||||||||||||||||||||| || | ||||| ||| ||||||||||| Sbjct 300 GAGGTTCTTTAAACGCTTGACCATGTCTTATCCGGGCAAACCTTTAGCAAGACGGTTCGA 359 Query 346 GCCTTCGGCCACCACGACGTCTCCATAGCATGGCTACCTTCGACGTCGTCTCGTTGGAGG 405 ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 360 GCCTTCGGCCACCACGAAGTCTCCGTAGCATGGCTACCTTCGACGTCGTCTCGTTGGAGG 419 Query 406 T 406 | Sbjct 420 T 420 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76857034395 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5