BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899060
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61035.1 | Symbols: | Cytochrome P450 superfamily protein |... 887 0.0
AT3G60955.1 | Symbols: CYP76C8P | a cytochrome P450 pseudogene.... 725 0.0
> AT3G61035.1 | Symbols: | Cytochrome P450 superfamily protein
| chr3:22592252-22593649 REVERSE LENGTH=1023
Length=1023
Score = 887 bits (480), Expect = 0.0
Identities = 674/759 (89%), Gaps = 48/759 (6%)
Strand=Plus/Plus
Query 335 AGACGGTTCGAGCCTTCGGCCACCACGACGTCTCCATAGCATGGCTACCTTCGACGTCGT 394
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 297 AGACGGTTCGAGCCTTCGGCCACCACGAAGTCTCCGTAGCATGGCTACCTTCGACGTCGT 356
Query 395 CTCGTTGGAGGTTATGGAGGAAGGTACTGGCGACAAAACTTTTCTCACGGGAGCGTCACA 454
||||||||||||||| || | |||||||||||||||||||||||||||||| |||||
Sbjct 357 CTCGTTGGAGGTTAT---GG-A--TACTGGCGACAAAACTTTTCTCACGGGAGCATCACA 410
Query 455 AAGCCACGAAGTCCGTACGGTCGAAGAAAGCGAAAGAACTTATAACA-TTCATTATCGAA 513
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| ||
Sbjct 411 AAGCCACGAAGTCCGTAAGGTCGAAGAAAGCGAAAGAACTTGTAACATTTCATTATCCAA 470
Query 514 AGAGGCGAACGAGGCTTCTCCGTCGACATTG--C-T-CGTGCTTGCTTCATCACGTCGCT 569
||||||||||||||||||||||||||||||| | | ||||| |||||||||||||||||
Sbjct 471 AGAGGCGAACGAGGCTTCTCCGTCGACATTGCTCGTACGTGCGTGCTTCATCACGTCGCT 530
Query 570 TAATGTA-ATCTCAAACGTTGTGTTTTCGATCGACTTAGGTGGTTACGACCCGAGAGCCT 628
||||||| | ||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 531 TAATGTAGA-CTCAAACGTTGTGTTTTCGATCGACTTAGGTAGTTACGATCCGAGAGCCT 589
Query 629 CCACGGAGCTCCAGGACTCATTGTCTCGTATGATGAAAATAATGGGGAAACCAAACCTCG 688
||||||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||||
Sbjct 590 CCACGGAGCTCCAAGACTCCTTGTCTCGTATGATGAAAACAATGGGGAAACCGAACCTCG 649
Query 689 TAAACTATTTTCCGTCTCTTGAGTTTCTTGA-CATACAAGGTATCCGGAAAGAGATGAAG 747
||| |||||||||||||||||||||||||| | |||| |||||||||||||||||||||
Sbjct 650 CAAATTATTTTCCGTCTCTTGAGTTTCTTGATC-TACAGGGTATCCGGAAAGAGATGAAG 708
Query 748 G---TGTGTTCGGAGAGGTTGTTTCAGATTTTTCAAGGGCTCGTCAATGCTCGAATCGCG 804
| ||||||||||||||||||||||| |||||||||| ||| || ||||||| ||||||
Sbjct 709 GTCATGTGTTCGGAGAGGTTGTTTCAGGTTTTTCAAGGCCTCATCGATGCTCGGATCGCG 768
Query 805 GAAAGATCATCACAGACTGGACCTAGA---GATGCATTGAGAGGTGATTTGTTGGATTCA 861
||||||||||| |||| |||||||||| |||||| ||||||| |||||||||||||||
Sbjct 769 GAAAGATCATCGCAGATTGGACCTAGAGTCGATGCACTGAGAGGCGATTTGTTGGATTCA 828
Query 862 CTAATCGATCTTATTCAAGAAGAGGGATCGGAAGTCGACATGAATGATATCAACCACTTT 921
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 829 GTGATCGATCTTATTCAAGAAGAGGGATCGGAAGTCGACATGAATGATATCAA--AC--- 883
Query 922 TTATGCGACTTGTTTATTGCTGGAACGGAAACGAACTCTACCACAGTGGAATGGGCATTG 981
| | || ||||| || | || || | ||||||| ||||||||| |||||
Sbjct 884 --A--C---TT-TTTAT-GC---A-CG-AA-C----TCTACCATTGTGGAATGGACATTG 924
Query 982 GCTGAGCTACTTCGTAACCCAG-AGGCTATGGCTAACGCTAAAGTCGAGATCAACTTTAT 1040
||||||||||||| ||||||| || ||||||||||| ||||||| |||| |||||||||
Sbjct 925 GCTGAGCTACTTCATAACCCAATAG-CTATGGCTAACACTAAAGTTGAGACCAACTTTAT 983
Query 1041 TGTTGGCCCAAACCGTTACGTTCGTGACTCCAATCTCTT 1079
|||||||| ||| ||||||||| ||||||||||||||||
Sbjct 984 TGTTGGCC-AAATCGTTACGTTTGTGACTCCAATCTCTT 1021
Score = 455 bits (246), Expect = 6e-127
Identities = 275/289 (95%), Gaps = 2/289 (1%)
Strand=Plus/Plus
Query 1 ATGAAGCACACCATAGCTCTAGCTCTGCTTTTGATACTTGGCTTCTTTTTAACATATCTT 60
||||||||||| ||||||||||||||||||||||||||| ||||| |||| || ||||||
Sbjct 7 ATGAAGCACACAATAGCTCTAGCTCTGCTTTTGATACTTAGCTTCCTTTTCACGTATCTT 66
Query 61 CTCCTTGTCGCTGTTAAATCACGACGACGGAGATCAAGC-CAACTGGCACTGCTTCCGGG 119
| |||||||||||||||||||||||||||||||||||| | |||||||||| |||||||
Sbjct 67 ATTCTTGTCGCTGTTAAATCACGACGACGGAGATCAAGCTC-ACTGGCACTGGTTCCGGG 125
Query 120 ACCTCCGGGACCTTCGGGATGGCCCATAATCGGAAACCTTCTCCAGATCATCGGAAAAGC 179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 ACCTCCCGGACCTTCGGGATGGCCCATAATCGGAAACCTTCTCCAGATCATCGGAAAAGC 185
Query 180 TCCTCACCGTTCACTTGCTGATCTCTCGAGAGTTTATGGACCAGTCATGAGTCTTAGGCT 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 TCCTCACCGTTCATTTGCTGATCTCTCGAGAGTTTATGGACCAGTCATGAGTCTTAGGCT 245
Query 240 TGGAAGTTTAGCCACAGTGGTCATTTCTTCACCAGATGCAGCAAGAGAG 288
|||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 246 TGGAAGTTTAACCAAAGTGGTCATTTCTTCACCAGATGCAGCAAGAGAG 294
> AT3G60955.1 | Symbols: CYP76C8P | a cytochrome P450 pseudogene.
overlaps with a real gene on the other strand. | chr3:22529643-22532476
REVERSE LENGTH=2834
Length=2834
Score = 725 bits (392), Expect = 0.0
Identities = 482/523 (92%), Gaps = 15/523 (3%)
Strand=Plus/Plus
Query 419 TACTGGCGACAAAACTTTTCTCACGGGAGCGTCACAAAGCCACGAAGTCCGTACGGTCGA 478
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 500 TACTGGCGACAAAACTTTTCTCACGGGAGCATCACAAAGCCACGAAGTCCGTAAGGTCGA 559
Query 479 AGAAAGCGAAAGAACTTATAACA-TTCATTATCGAAAGAGGCGAACGAGGCTTCTCCGTC 537
||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 560 AGAAAGCGAAAGAACTTGTAACATTTCATTATCCAAAGAGGCGAACGAGGCTTCTCCGTC 619
Query 538 GACATTG--C-T-CGTGCTTGCTTCATCACGTCGCTTAATGTA-ATCTCAAACGTTGTGT 592
||||||| | | ||||| |||||||||||||||||||||||| | ||||||||||||||
Sbjct 620 GACATTGCTCGTACGTGCGTGCTTCATCACGTCGCTTAATGTAGA-CTCAAACGTTGTGT 678
Query 593 TTTCGATCGACTTAGGTGGTTACGACCCGAGAGCCTCCACGGAGCTCCAGGACTCATTGT 652
||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 679 TTTCGATCGACTTAGGTAGTTACGATCCGAGAGCCTCCACGGAGCTCCAAGACTCCTTGT 738
Query 653 CTCGTATGATGAAAATAATGGGGAAACCAAACCTCGTAAACTATTTTCCGTCTCTTGAGT 712
||||||||||||||| |||||||||||| ||||||| ||| |||||||||||||||||||
Sbjct 739 CTCGTATGATGAAAACAATGGGGAAACCGAACCTCGCAAATTATTTTCCGTCTCTTGAGT 798
Query 713 TTCTTGA-CATACAAGGTATCCGGAAAGAGATGAAGG---TGTGTTCGGAGAGGTTGTTT 768
||||||| | |||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 799 TTCTTGATC-TACAGGGTATCCGGAAAGAGATGAAGGTCATGTGTTCGGAGAGGTTGTTT 857
Query 769 CAGATTTTTCAAGGGCTCGTCAATGCTCGAATCGCGGAAAGATCATCACAGACTGGACCT 828
||| |||||||||| ||| || ||||||| ||||||||||||||||| |||| |||||||
Sbjct 858 CAGGTTTTTCAAGGCCTCATCGATGCTCGGATCGCGGAAAGATCATCGCAGATTGGACCT 917
Query 829 AGA---GATGCATTGAGAGGTGATTTGTTGGATTCACTAATCGATCTTATTCAAGAAGAG 885
||| |||||| ||||||| ||||||||||||||| | |||||||||||||||||||||
Sbjct 918 AGAGTCGATGCACTGAGAGGCGATTTGTTGGATTCAGTGATCGATCTTATTCAAGAAGAG 977
Query 886 GGATCGGAAGTCGACATGAATGATATCAACCACTTTTTATGCG 928
||||||||||||||||||||||||||||| |||||||||||||
Sbjct 978 GGATCGGAAGTCGACATGAATGATATCAAACACTTTTTATGCG 1020
Score = 564 bits (305), Expect = 1e-159
Identities = 385/421 (91%), Gaps = 16/421 (4%)
Strand=Plus/Plus
Query 1 ATGAAGCACACCATAGCTCTAGCTCTGCTTTTGATACTTGGCTTCTTTTTAACATATC-T 59
|||||||||||||||||||| ||||||||||||| |||| ||||| ||||||| |||| |
Sbjct 1 ATGAAGCACACCATAGCTCTTGCTCTGCTTTTGACACTTAGCTTCCTTTTAACGTATCTT 60
Query 60 -T-C---TCC-TTGTCGCTGTTAAATCACGACGACGGAGATCAAG--C-CA----ACTGG 106
| | ||| |||||||||||||||||||||||||||||||||| | || |||||
Sbjct 61 CTCCTTGTCCGTTGTCGCTGTTAAATCACGACGACGGAGATCAAGCTCACAGCTCACTGG 120
Query 107 CACTGCTTCCGGGACCTC-CGGGACCTTCGGGATGGCCCATAATCGGAAACCTTCTCCAG 165
|||||||||||||||||| | |||||||||||||| ||| ||||||||||||||||||||
Sbjct 121 CACTGCTTCCGGGACCTCTC-GGACCTTCGGGATGACCCGTAATCGGAAACCTTCTCCAG 179
Query 166 ATCATCGGAAAAGCTCCTCACCGTTCACTTGCTGATCTCTCGAGAGTTTATGGACCAGTC 225
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 ATCATCGGAAAAGCTCCTCACCGTTCACTTGCTGATTTCTCGAGAGTTTATGGACCAGTC 239
Query 226 ATGAGTCTTAGGCTTGGAAGTTTAGCCACAGTGGTCATTTCTTCACCAGATGCAGCAAGA 285
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 240 ATGAGTCTTAGGCTTGGAAGTTTAACCAAAGTGGTCATTTCTTCACCAGATGCAGCAAGA 299
Query 286 GAGGTTCTGAAAACGCTTGACCATGTCTTATCTGGACGAACCTCTAGTGAGACGGTTCGA 345
|||||||| |||||||||||||||||||||| || | ||||| ||| |||||||||||
Sbjct 300 GAGGTTCTTTAAACGCTTGACCATGTCTTATCCGGGCAAACCTTTAGCAAGACGGTTCGA 359
Query 346 GCCTTCGGCCACCACGACGTCTCCATAGCATGGCTACCTTCGACGTCGTCTCGTTGGAGG 405
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 GCCTTCGGCCACCACGAAGTCTCCGTAGCATGGCTACCTTCGACGTCGTCTCGTTGGAGG 419
Query 406 T 406
|
Sbjct 420 T 420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76857034395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5