BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899066

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G61090.1 | Symbols:  | Putative endonuclease or glycosyl hyd...   494    3e-139


> AT3G61090.1 | Symbols:  | Putative endonuclease or glycosyl hydrolase 
| chr3:22609040-22609822 REVERSE LENGTH=597
Length=597

 Score =  494 bits (267),  Expect = 3e-139
 Identities = 347/384 (90%), Gaps = 12/384 (3%)
 Strand=Plus/Plus

Query  1    GTTTATGGTGAGAAGACTAATAAGTTCAAGGATGACTTTCTCCTCGCTGATATCATGTTC  60
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  163  GTTTATGGTGAGAGGACTAATAAGTTCAAGGATGACTTTCTCCTCGCTGATATCATGTTC  222

Query  61   TTACCCGCAG-A--TGCAAG-AGCGAGATATATGAGGATGGGGAATGATTTCTTTTGCTG  116
            |||||||||| |  || ||| |||||||| |||||||||| | |||||||||||||||||
Sbjct  223  TTACCCGCAGGAGATG-AAGGAGCGAGATTTATGAGGATGTGTAATGATTTCTTTTGCTG  281

Query  117  GGGATTTGACAATCGTAAATCAACTTTGATGGTAATGTCACGAGACAACACTGAGTTCGC  176
            ||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  282  GGGAAATGACAATCGTAAATCAACTTTGATGGTAATGTCACGAGACAGCACTGAGTTCGC  341

Query  177  CTCTTCTCTCATAATGTACAAGAACTTGAATTTCAACATTCTCGTAGCACAGCCAGAAAA  236
            ||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  342  CTCTTCTTTCGTAATGTACAAAAACTTGAATTTCAACATTCTCGTAGCACAGCCAGAAAA  401

Query  237  CGCACACA-AAAGATGTTCTAACTGCAGAAAGCCTTTGGACGA-GATTATCACCGATGAA  294
            || | ||| ||| |||| ||  ||||||||||||||||||  | ||| ||||| || |||
Sbjct  402  CGTAGACAGAAA-ATGTCCTGTCTGCAGAAAGCCTTTGGAA-ATGATCATCACTGACGAA  459

Query  295  TGGATTTGGGAAAGTCTCTCAGCTGGAGGAGACCCTATTACCAAAACCCAAGAA---CCA  351
            ||| |||||||||| ||||| ||||||||||||||| |  ||||||||||||||   |||
Sbjct  460  TGGGTTTGGGAAAGCCTCTCTGCTGGAGGAGACCCTCTCCCCAAAACCCAAGAAGAACCA  519

Query  352  GACCTTAGTAACTCTTGTCATTAA  375
            ||||||||||||||||||||||||
Sbjct  520  GACCTTAGTAACTCTTGTCATTAA  543



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17643979899


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5