BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899069
Length=261
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61111.1 | Symbols: | Zinc-binding ribosomal protein family... 333 5e-91
AT3G61110.1 | Symbols: ARS27A, RS27A | ribosomal protein S27 | ... 313 6e-85
> AT3G61111.1 | Symbols: | Zinc-binding ribosomal protein family
protein | chr3:22613230-22614002 REVERSE LENGTH=344
Length=344
Score = 333 bits (180), Expect = 5e-91
Identities = 230/253 (91%), Gaps = 8/253 (3%)
Strand=Plus/Plus
Query 1 ATGGTTCTTCAAAACGATATCGATCTGCTTAACCCTCCAGCTGAGCTTGAGAAGAGGAAG 60
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 84 ATGGTTCTTCAAAACGATATCGATCTGCTTAATCCTCCGGCTGAGCTTGAGAAGAGGAAG 143
Query 61 CATAAGCTCAAGCGTCTTGTTC-AGTCTCCCAATTCCTATTTCATG-TATGTGAGGTGCT 118
|||||||||||||||||||||| | || || ||||||||||||||| | ||| |||||||
Sbjct 144 CATAAGCTCAAGCGTCTTGTTCCA-TCACCAAATTCCTATTTCATGCT-TGTTAGGTGCT 201
Query 119 ATGGCTGCT-TCAACATCACGACTATTTTCAGTCACTCACAGACAGTCGTGGTATGGGGA 177
|| ||| | |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 202 CTGACTG-TATCAACATCACAACTATTTTCAGTCACTCACAGACAGTCGTGGTATGCGGA 260
Query 178 AAATGCCAGAACGTTCTGTGCCAGCCTACAGGAGGAAAGGCCAGGCTC-CAAGAAGGATG 236
|| || ||||||||||||||||| ||||||||||| ||||||| |||| || | ||||||
Sbjct 261 AAGTGTCAGAACGTTCTGTGCCAACCTACAGGAGGCAAGGCCAAGCTCACA-GTAGGATG 319
Query 237 CTCTTTCAGGAAG 249
|||||||||||||
Sbjct 320 CTCTTTCAGGAAG 332
> AT3G61110.1 | Symbols: ARS27A, RS27A | ribosomal protein S27
| chr3:22611634-22612904 FORWARD LENGTH=609
Length=609
Score = 313 bits (169), Expect = 6e-85
Identities = 224/250 (90%), Gaps = 6/250 (2%)
Strand=Plus/Plus
Query 1 ATGGTTCTTCAAAACGATATCGATCTGCTTAACCCTCCAGCTGAGCTTGAGAAGAGGAAG 60
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 77 ATGGTTCTTCAAAACGATATCGATCTGCTTAACCCACCTGCTGAGCTTGAGAAGAGGAAG 136
Query 61 CATAAGCTCAAGCGTCTTGTTCAGTCTCCCAATTCCTAT-TTCATGTATGTGAGGTGCTA 119
|| ||||||||||||||||| |||||||||||||||| | |||||| |||||| |||| |
Sbjct 137 CACAAGCTCAAGCGTCTTGTCCAGTCTCCCAATTCCT-TCTTCATGGATGTGAAGTGCCA 195
Query 120 TGGCTGCTTCAACATCACGACTATTTTCAGTCACTCACAGACAGTCGTGGTATGGGGAAA 179
||||||||||||||||| ||| ||||||||||||| ||||| || ||||| || |||||
Sbjct 196 AGGCTGCTTCAACATCACTACTGTTTTCAGTCACTCGCAGACTGTTGTGGTGTGCGGAAA 255
Query 180 ATGCCAGA-ACGTTCTGTGCCAGCCTACAGGAGGAAAGGCCAGGCTC-CAAGAAGGATGC 237
||||||| | |||||||||||||||||||||||||||| | |||| | |||||||||
Sbjct 256 CTGCCAGACAA-TTCTGTGCCAGCCTACAGGAGGAAAGGCAAAGCTCACC-GAAGGATGC 313
Query 238 TCTTTCAGGA 247
||||||||||
Sbjct 314 TCTTTCAGGA 323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11913456513
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5