BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899070

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G61113.1 | Symbols:  | Ubiquitin related modifier 1 | chr3:2...   449    5e-126


> AT3G61113.1 | Symbols:  | Ubiquitin related modifier 1 | chr3:22614582-22615415 
REVERSE LENGTH=300
Length=300

 Score =  449 bits (243),  Expect = 5e-126
 Identities = 265/276 (96%), Gaps = 0/276 (0%)
 Strand=Plus/Plus

Query  10   GGAGGTTTAGAATTGCTCTGTGACTCCGTCAAGATTCATAAAGTTAACATCAACTTCCCC  69
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
Sbjct  25   GGAGGTTTAGAATTGCTCTGTGACTCCGTAAAGATTCATAAAGTTAACATCAACTTACTC  84

Query  70   AATGAATCTGATGTCTTGACAATGAAGGATTTGCTATCATGGGTTCGTACCAATTTGATC  129
            ||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  85   AATGATTCTGATATCTTGACAATGAAGGATTTGCTTTCATGGGTTCGTACCAATTTGATC  144

Query  130  AAGGAAAGGCCTGAAATGTTCATGAAAGGCGATACTGTGAGACCTGGAGTTCTCGTGCTG  189
            ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct  145  AAGGAAAGGCCTGAAATGTTCATGAAAGGCGATACCGTGAGGCCTGGAGTTCTCGTGCTG  204

Query  190  GTTAACGACTGCGATTGGGAACTTAGCGGCCAGCTCGATACAACATTAGAAGATAAAGAT  249
            ||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct  205  GTTAATGACTGCGATTGGGAACTTAGTGGTCAGCTCGATACAACATTAGAAGATAAAGAT  264

Query  250  GTTATAGTTTTCATTTCGACTCTGCACGGTGGATGA  285
            ||||||||||||||||||||||||||||||||||||
Sbjct  265  GTTATAGTTTTCATTTCGACTCTGCACGGTGGATGA  300



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13119882489


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5