BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899080
Length=225
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61182.1 | Symbols: LCR54 | low-molecular-weight cysteine-ri... 322 9e-88
> AT3G61182.1 | Symbols: LCR54 | low-molecular-weight cysteine-rich
54 | chr3:22647771-22648168 REVERSE LENGTH=261
Length=261
Score = 322 bits (174), Expect = 9e-88
Identities = 207/223 (93%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 1 ATGACTAAAACCATCACTCTTGCTATCTTCATGGTCGTCCTCGTTTTAGGGATGGTGATA 60
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 31 ATGACTAAAGCCATCACTCTTGCTATCTTTATGGTCGTCCTCGTTTTAGGGATGGTGACA 90
Query 61 AAGGAAACGCAAGGAGAAGAAAATCAGTGTTATGAATATATTTCAACACCGCAGGAAAAC 120
||||||||||||||||||||||| ||||||||||| ||| ||| ||||||||||||||||
Sbjct 91 AAGGAAACGCAAGGAGAAGAAAAACAGTGTTATGATTATCTTTTAACACCGCAGGAAAAC 150
Query 121 TGCGAAGGTTTGGTGTGTGCACATGACTGTACTATGAAGCATGGTGGAAACGGCGTGTGT 180
|||||||||||| | || |||||||| ||||||||| |||||||||||||||||||||||
Sbjct 151 TGCGAAGGTTTGATATGCGCACATGAATGTACTATGCAGCATGGTGGAAACGGCGTGTGT 210
Query 181 GTTGATACTACAAGCACGA-CATGCATCTGCACTTATGATTGC 222
|||||||||||||||||| | ||||||||||||||||| |||
Sbjct 211 GTTGATACTACAAGCACGGTC-TGCATCTGCACTTATGACTGC 252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10103817549
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5