BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899091
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61280.1 | Symbols: | Arabidopsis thaliana protein of unkno... 372 1e-102
AT3G61290.1 | Symbols: | Arabidopsis thaliana protein of unkno... 246 8e-65
AT2G45840.1 | Symbols: | Arabidopsis thaliana protein of unkno... 128 3e-29
> AT3G61280.1 | Symbols: | Arabidopsis thaliana protein of unknown
function (DUF821) | chr3:22680960-22683769 FORWARD LENGTH=1976
Length=1976
Score = 372 bits (201), Expect = 1e-102
Identities = 224/235 (95%), Gaps = 1/235 (0%)
Strand=Plus/Plus
Query 37 AGTGAGTACATGATGAAGAACTTAAAGATGAAGTATGTGTATGATTACATGTTGTATGTG 96
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1455 AGTGAGTACATGATGAAGAACCTAAAGATGAAGTATGTGTATGATTACATGTTGTATGTG 1514
Query 97 TTACAAGGCTATGGGAAATTGATGAAGTTGGATGTGACAGTGCCGGAAAATGACACGGAG 156
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1515 TTACAAGGCTATGGGAAATTGATGAAGTTGGATGTGACAGTGCCTGAAAATGCCACGGAG 1574
Query 157 GTTTGTTCAAAGACGATGGCTTGTCCTATTACTGATGGTGGACGGATCAGGCAGTGCATT 216
||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1575 GTTTGTTCAGAGACGATGGCTTGTTCGATTACTGATGGTGGACGGATCAGGCAGTGCATG 1634
Query 217 GAT-ACTCGTTGGTTATGTCACCGAGCGTCAAGGCGGCTTGTGATTTGCCACCTT 270
|| |||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1635 GACGACTCGTTGGTTATGTCTCCGAGTGTCAAGGCGGCTTGTGATTTGCCACCTT 1689
> AT3G61290.1 | Symbols: | Arabidopsis thaliana protein of unknown
function (DUF821) | chr3:22684407-22686907 FORWARD LENGTH=1503
Length=1503
Score = 246 bits (133), Expect = 8e-65
Identities = 199/231 (86%), Gaps = 3/231 (1%)
Strand=Plus/Plus
Query 37 AGTGAGTACATGATGAAGAACTTAAAGATGAAGTATGTGTATGATTACATGTTGTATGTG 96
||||| ||||| ||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1012 AGTGATTACATTATGAAGAACCTAGAGATGAAGTATGTGTATGATTACATGTTGTATGTG 1071
Query 97 TTACAAGGCTATGGGAAATTGATGAAGTTGGATGTGACAGTGCCGGAAAATGACA-CGGA 155
|| ||||| || |||||| | ||||||||||||||||| ||||| ||||||| || | ||
Sbjct 1072 TTGCAAGGGTACGGGAAACTAATGAAGTTGGATGTGACTGTGCCTGAAAATG-CAACCGA 1130
Query 156 GGTTTGTTCAAAGACGATGGCTTGTCCTATTACTGATGGTGGACGGATCAGGCAGTGCAT 215
|| ||||| |||||||||||||||| || ||||| ||||| | |||||||||||||||
Sbjct 1131 AGTGTGTTCGGAGACGATGGCTTGTCCGATCACTGACGGTGGCCTGATCAGGCAGTGCAT 1190
Query 216 TGAT-ACTCGTTGGTTATGTCACCGAGCGTCAAGGCGGCTTGTGATTTGCC 265
|| |||| ||||||||||| || ||||| || ||||||||||||||||
Sbjct 1191 GGACGACTCATTGGTTATGTCTCCAAGCGTTAAATCGGCTTGTGATTTGCC 1241
> AT2G45840.1 | Symbols: | Arabidopsis thaliana protein of unknown
function (DUF821) | chr2:18869261-18871561 FORWARD LENGTH=1671
Length=1671
Score = 128 bits (69), Expect = 3e-29
Identities = 167/213 (78%), Gaps = 12/213 (6%)
Strand=Plus/Plus
Query 52 AAGAACT-TAAAGATGAAGTATGTGTATGATTACATGTTGTATGTGTTACAAGGCTATGG 110
||||| | |||||||||||||||||||||||||||||||| || | | ||| |||||||
Sbjct 1265 AAGAA-TCTAAAGATGAAGTATGTGTATGATTACATGTTGCATCTACTGCAAAGCTATGG 1323
Query 111 GAAATTGATGAAGTTGGATGT-GACAGTGCCGGAAA-ATGACACGGAGGTTTGTTCAAAG 168
||| ||||||||| || |||| || |||||| || | | || ||| || ||| | ||
Sbjct 1324 GAAGTTGATGAAGATGAATGTAGA-AGTGCCTCAAGGA-GCCAAGGAAGTGTGTCCGGAG 1381
Query 169 ACGATGGCTTGTCCTATTACTGATGGTGGACGGATCAGGCAGTGC-ATTGAT-ACTCGTT 226
|| ||||||||||| || | |||| || || || || || | | || ||| |||| ||
Sbjct 1382 ACAATGGCTTGTCCAATCA---ATGGAGGCCGAATGAGACAAT-CTATGGATGACTCATT 1437
Query 227 GGTTATGTCACCGAGCGTCAAGGCGGCTTGTGA 259
||||||||| |||||||| ||||| |||||||
Sbjct 1438 GGTTATGTCTCCGAGCGTTAAGGCTACTTGTGA 1470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15834340935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5