BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899102
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61390.2 | Symbols: | RING/U-box superfamily protein | chr3... 813 0.0
> AT3G61390.2 | Symbols: | RING/U-box superfamily protein | chr3:22716353-22718373
FORWARD LENGTH=1476
Length=1476
Score = 813 bits (440), Expect = 0.0
Identities = 682/790 (86%), Gaps = 51/790 (6%)
Strand=Plus/Plus
Query 1 ATGACATTAAAGATTCCGATCCAAGAAG-TGGTGAAAATGGTTGGCTCTTTAAGA--T-A 56
||||||||||||||||||||||||| || |||||||||||||||||||||||||| | |
Sbjct 66 ATGACATTAAAGATTCCGATCCAAG-AGATGGTGAAAATGGTTGGCTCTTTAAGATCTCA 124
Query 57 T--C-GCGA-ATCAATGGAAACTA-GCAAAATAAAGACGCTGATGGATGAGAAGATATAT 111
| | ||| ||| | ||| | | | |||| | | | | | |||||||| |||
Sbjct 125 TGGCATCGATATCCCT-GAATCAATG-GAAAT-CA-A--C--AAAAAAGAGAAGATCTAT 176
Query 112 GTAGCAGTGACAGGGAAAGATCTAGAGAGCAAGTCTAGTCTTGTTTGGGCGATACAGAAC 171
||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 177 GTAGCAGTGACAGAGAAAGATCTAGAAAGCAAGTCTAGTCTCGTTTGGGCGATACAGAAC 236
Query 172 AGTGGAGGCAAAGAGTTTTGCATCGTCCATGTTCATCAACCTATCCAGATCTCAGTCCAG 231
|||||||||||||||||||||||||||||||||||||||||||| | | | | |
Sbjct 237 AGTGGAGGCAAAGAGTTTTGCATCGTCCATGTTCATCAACCTAT-C----C-C-G----G 285
Query 232 GGGACGATGTTTCACGAGCAGAAATTGCGGCTTTATAGAAAAGAGAAGGAGAAAGCACAT 291
|||| |||||||||||||||||||||||| || || |||||||||||||| |||||||||
Sbjct 286 GGGA-GATGTTTCACGAGCAGAAATTGCGTCTCTACAGAAAAGAGAAGGACAAAGCACAT 344
Query 292 AAGAATTTGGATAAGTACCTTCATATATGCAGGCAAATGCAGGTCAATGCAGAGATCATT 351
||||||| ||| ||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 345 AAGAATTCGGAGAAGTACCTTCAAATATGCAGGCAAATGCAGGTCACTGCAGAGATCATA 404
Query 352 TCTATCGAAATGGATTCGGTAGAGGAAGGTATTCTCCAATTGATATCTCAGCGCGGAGTC 411
| ||| |||| ||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 405 TATATTGAAACGGATTCGGTAGAGAAAGGTATCCTCCAATTGATATCTCAGCGCGGAGTC 464
Query 412 ACTAAACTCGTCATGGGAGCAGCAGCTGATAGACACTATTCAATGAGAATGAAAGACTTA 471
|| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 465 ACCAAACTCGTTATGGGAGCAGCAGCTGATAGACACTATTCAATGAGAATGAGAGACTTA 524
Query 472 CAGTCCAAGAAAGCTATTTACATTCACAGAGAAGCGCCTGCTATTTGTCATATATGGTTT 531
|||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||
Sbjct 525 AAGTCCAAGAAAGCTATTTACATTCACAGAGAAGCGCCTGCCACTTGTCTTATATGGTTT 584
Query 532 ACGTGCAAAGGATACCTAATTTGTTCAAGGGAAGCTAGAAGCA-CAGATAACTTTTATCT 590
|||||||| || ||||||||||||||||||||||||||||| | || ||||||| |||||
Sbjct 585 ACGTGCAACGGTTACCTAATTTGTTCAAGGGAAGCTAGAAG-AGCAAATAACTTGTATCT 643
Query 591 AGAATATTCATCGTCAAATTCTTTGAGTCAATCCAAAATAACTAGAGAAACTGAAAGT-- 648
||||| | |||||||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct 644 AGAATGTGCATCGTCAAATTCTTTGAGTCAATCCGACATAACTAGAGGAACTGAAAGTAT 703
Query 649 -GTTCCAAGCTCGA-G-T-ATA-GTT-AAAG-A--TG--AT-G---CTGAGACTTCCAAA 693
||| ||| | || | | || | | ||| | || | | ||||| |||| |||
Sbjct 704 AGTTA-AAGAT-GATGATCATCTGATCAAATTAGCTGTCACAGAAGCTGAGGCTTCGAAA 761
Query 694 AGGAAAGCATGCTTTGAGGCATCTAAGCGTGAAGAAGCTGAAAAATCTGCAGTTGATGCA 753
||||||||| |||||||||||| |||||| ||||||||||||||| ||||||||||||||
Sbjct 762 AGGAAAGCACGCTTTGAGGCATGTAAGCGCGAAGAAGCTGAAAAAACTGCAGTTGATGCA 821
Query 754 CTCAAAAAGG 763
||||||||||
Sbjct 822 CTCAAAAAGG 831
Score = 678 bits (367), Expect = 0.0
Identities = 450/490 (92%), Gaps = 5/490 (1%)
Strand=Plus/Plus
Query 761 AGG-AAGAGACAGAGAAGGCACTGAGGAAAACG-AATGAAGAACTTGAAAAGATGAGATC 818
||| |||| |||||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 873 AGGAAAGAAACAGAGAAGGCACTGAGGAAAA-GAAATGACGAACTTGAAAAGATGAGATC 931
Query 819 AGAAGCCGAGTCCCAAATAACAGAATCTTATACGGTGATAAGAAAGCTTCAAGAAAAGAA 878
|||| ||||| |||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 932 AGAATCCGAGACCCAAATAACCGAATCTTATACTGTGATTAGAAAGCTTCAAGAAAAGAA 991
Query 879 CAACTTATCAATGGAAACGTTGAGAAGACTCAGAGAAGAACAAGAAGAGCTGAAGATAAA 938
||||||||||||||||||||| ||| || |||||||||||||||||||| ||||||||||
Sbjct 992 CAACTTATCAATGGAAACGTTTAGAGGAATCAGAGAAGAACAAGAAGAGTTGAAGATAAA 1051
Query 939 GCTTAGAGAAGTATCAAAGCTGAAGGGTAAGCGCGAGGAAGAGGAAG-TGTCTCCCTCTA 997
||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct 1052 GCTTAGAGAAGTATCAAAGCTGAAGGGTAAGCGCGAGGAAGAGGAAGCT-TCTACCTCTA 1110
Query 998 ACCACCGTGAACCGCCTCAGTACTTCATTTGTCCCATTACACAGGATATAATGGAGGATC 1057
|||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1111 ACCACCGTGAACCGCCACAATACTTTATTTGTCCCATTACACACGATATAATGGAGGATC 1170
Query 1058 CTCATGTAGCAACAGATGGTTTTACATATGAAAGAGAAGCTATAAGTGGGTGGTTTGCGA 1117
| ||||||||| | ||||| |||||||||||| ||||||| ||||| | ||||||| ||
Sbjct 1171 CACATGTAGCAGCTGATGGATTTACATATGAAGGAGAAGCCATAAGCCGTTGGTTTGAGA 1230
Query 1118 GAGGACACGATACTTCTCCAATGATAAACAAAAGGCTTCCTCACACGAGCTTGGTTCCAA 1177
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 GAGGACATGAGACTTCTCCAATGATAAACAAAAGGCTTCCTCACACGAGCTTGGTTCCAA 1290
Query 1178 ACCTTGCTCTTCGATCCGCAATTCAAGAATGGCTTCAAGTTCCAGAATCATTGAACAAAT 1237
| |||||||||||||||||||||||||||||||||||| ||| |||| |||||||| |
Sbjct 1291 ATCTTGCTCTTCGATCCGCAATTCAAGAATGGCTTCAACTTCGTGAATTATTGAACAGAC 1350
Query 1238 CCTCTGCTTG 1247
||||||||||
Sbjct 1351 CCTCTGCTTG 1360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62248675800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5