BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899104
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1426 0.0
> AT3G60980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:22565309-22566745 REVERSE LENGTH=1437
Length=1437
Score = 1426 bits (772), Expect = 0.0
Identities = 1114/1270 (88%), Gaps = 59/1270 (5%)
Strand=Plus/Plus
Query 1 ATGTCTCTGATCTGCCGCCTCAATCTTGGTCGGCGTTTCTCCACCGCCCTGCCAAGAAGA 60
|||||||||||| |||||||||||||||||||||| |||| ||||||| |||||||||||
Sbjct 68 ATGTCTCTGATCGGCCGCCTCAATCTTGGTCGGCGCTTCTGCACCGCCGTGCCAAGAAGA 127
Query 61 GCGGAGGACATAATGTCAAACCCAGATTGCCGTCCTAC-GCAGCTATGCTTGAGAGTCAC 119
|||| |||||||||||||||||||||||||| ||| | | | ||||||||||| ||| |
Sbjct 128 TCGGAAGACATAATGTCAAACCCAGATTGCCGCCCTTCTG-ATCTATGCTTGAGGGTCTC 186
Query 120 GTACTTGATCAGATTCGTTGGAGATCTCGACACGGCGGCGAAGTACGCTCGTTTGGCTGT 179
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 187 GTACTTGATCAGATGCGTTGGGGATCTCGACACGGCGGCGAAGTACGCTCGTTTGGCTGT 246
Query 180 TTTCACCAG-ATTCAAATCGGAGACCACAATAA-AGACATGTCAATCCATCATCGGAGGC 237
||||||||| | ||||||||||| | |||| || | | ||||||||||||||||||||||
Sbjct 247 TTTCACCAGCA-TCAAATCGGAGTCAACAACAACA-ATATGTCAATCCATCATCGGAGGC 304
Query 238 ATGTTGCGGGATAAAAGGCCCGAGGATGCTTACGATCTCTTCGATTTCTTCTTCAATGAG 297
||||| ||||||||||||| | |||| ||||| ||||||| ||| |||||||||||| ||
Sbjct 305 ATGTTACGGGATAAAAGGCTCAAGGACGCTTATGATCTCTACGAGTTCTTCTTCAATCAG 364
Query 298 CATAAGCTAATACGCAACAGCCATTGCTGGAACTACATGC-TCGAATCTGGTTTACAACA 356
||||| || | || |||||||||||||||||||||||| | ||||||||||||| |||||
Sbjct 365 CATAACCTCAGACCCAACAGCCATTGCTGGAACTACAT-CATCGAATCTGGTTTCCAACA 423
Query 357 AGG-CGTTGTTGACGATGCTCTCG-AATTGTACCACCGGCCCTTCAAATT-TGGTAAAGA 413
||| | |||| |||||||||| | | || ||||||| | || |||| ||| ||
Sbjct 424 AGGTC-TTGTCAACGATGCTCT-GCATTTCCACCACCGATGCATC-AATTCCGGT-CAG- 478
Query 414 AATCCACGACTACCCAA-ATACCGATACTTTCAGGGTCATGACTAAAGGGTTAGTCCACT 472
||||||||||||||| | |||| |||||||| || |||||||||||||||||||||
Sbjct 479 -GTCCACGACTACCCAAGCGA-CGATTCTTTCAGGATCTTGACTAAAGGGTTAGTCCACT 536
Query 473 CCGGTCGATTGGACGAAGCCGAAGCCGTGCTTAGAGACAGGAAAGTCGATAGGATCATCT 532
||||||| |||||| ||||||||||| | ||||||| ||||| |||| || | | || ||
Sbjct 537 CCGGTCGGTTGGACCAAGCCGAAGCCTTTCTTAGAGGCAGGACAGTCAATCGAACCACCT 596
Query 533 ACCCAGATCACGTGGCGTACAACAATCTGATTCGCGGGTTTTTGGATCTTGGGAATTT-A 591
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 597 ACCCAGATCACGTGGCGTACAACAATCTGATTCGCGGGTTTTTGGATCTTGGAAATTTTA 656
Query 592 GACAAGGCGCATCTAGTCTTGGACGAATTCAAGCGCTTGTTTTTGATTGCTCTTTCCGAG 651
| |||||| |||||||||||| ||||||||| ||||||||||||||||| || ||||||
Sbjct 657 AA-AAGGCGAATCTAGTCTTGGGCGAATTCAAACGCTTGTTTTTGATTGCCCTATCCGAG 715
Query 652 ACCAAAGATGATTTGCACCATTCAAACTATGAAAGCAGAGTCGCATTCGTGATGGCCACA 711
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 716 ACCAAAGATGATTTGCACCATTCAAACTATGAAAACAGAGTCGCATTCCTGATGGCCACA 775
Query 712 TTCATGGAGTACTGGTTTAAGCAAGGTAAAGAGGTGGAAGCTATGGAGTGTTACAACCGT 771
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 776 TTCATGGAGTACTGGTTTAAGCAAGGTAAACAGGTGGAAGCTATGGAGTGTTACAACCGC 835
Query 772 TCTGTTCTATCAAACAGGTTACTTGTTTGTGCCGAAACGGGTAACGCCCTTTTGGTAGTC 831
| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 836 TGTGTTCTATCAAACAGGTTACTGGTTTGTGCCGAAACGGGTAACGCCCTTTTGAAAGTC 895
Query 832 CTGCTCAAATACGGTGAGAAAAAACATGCTTGGGCATTGTACCATGAACTCTTAGAT--- 888
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 896 CTGCTCAAATACGGTGAAAAAAAAAATGCTTGGGCATTGTACCATGAACTCTTAGATAAA 955
Query 889 ---G-AAC-G-TA-GAA---CA-G-ACTCTGATACCATTAAGATAATGGTGGACGAGTGT 936
| ||| | || | | | ||||||||||||||||||||||||||||||||||
Sbjct 956 AATGGAACCGGTAAGGGTTGCTTGGACTCTGATACCATTAAGATAATGGTGGACGAGTGC 1015
Query 937 TTTGATATGGGTCGACTTGGCGAGGCTATGGAGACCTACAAGAAGGCGAGAGCCAAGAAC 996
|||||||||||| | || | |||||||||||||||||||| ||||||||| ||||||||
Sbjct 1016 TTTGATATGGGTTGGTTTAGTGAGGCTATGGAGACCTACAAAAAGGCGAGACCCAAGAAC 1075
Query 997 -ATCT-CTTTCTATTTTACTGTATTCAATGACGGATACATTATCACAAGGTGTTGCGAAA 1054
| || | | | | | | | ||| | |||||||| ||||||| ||||||||
Sbjct 1076 GA-CTACCT-C-AGT-----G-A--CAA--A----TACATTATTACAAGGTTTTGCGAAA 1118
Query 1055 AC-GGCATGTTGTCAGAAGCAGAGTCTGTCTTTGTTGATTCACTTGCTGATGATATTGGA 1113
|| || ||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1119 ACAGG-ATGTTGTCAGAAGCAGAGTCTGTTTTTGTTGATTCACTTGCTGATGATTTTGGA 1177
Query 1114 TACGTTGATGTTAAGACTTTTAAAACAATGATCGATGCTTATGTGAAGGCTGGAAGAAT- 1172
|| |||||||||| |||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1178 TATATTGATGTTAACACTTATAAAACAATGATCGATGCTTATGTGAAGGCTGGGAGAATA 1237
Query 1173 CGATGATGCTATAAAAACCTCCAACAAGATGATCGATGCAACTCTAAAGGAGGTCTCCCA 1232
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 C-ATGATGCTATAAAAACCTCCAACAAGATGATCGATGCAACTCTAAAGGAGGTCTCCCA 1296
Query 1233 TCTCTTTTGA 1242
||||||||||
Sbjct 1297 TCTCTTTTGA 1306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61043862720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5