BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899116
Length=1458
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61510.1 | Symbols: ACS1, AT-ACS1 | ACC synthase 1 | chr3:22... 2159 0.0
AT5G28360.1 | Symbols: ACS3 | ACS3 (1-AMINOCYCLOPROPANE-1-CARBO... 671 0.0
AT3G49700.1 | Symbols: ETO3, ACS9, AtACS9 | 1-aminocyclopropane... 56.5 7e-07
> AT3G61510.1 | Symbols: ACS1, AT-ACS1 | ACC synthase 1 | chr3:22763495-22765730
REVERSE LENGTH=1467
Length=1467
Score = 2159 bits (1169), Expect = 0.0
Identities = 1365/1458 (94%), Gaps = 19/1458 (1%)
Strand=Plus/Plus
Query 6 TCAGCTACTATCCAAATTAGCCTCT-AGTGACAAACACGGAGAAGCTTCGCCGTACTTTG 64
||| || ||||||||||||| || | ||||||||||| ||||||||||||||||||||
Sbjct 24 TCAACTTCTATCCAAATTAG-CTTTGAGTGACAAACATGGAGAAGCTTCGCCGTACTTCC 82
Query 65 ATGGTTGGAAAGCTTACGACAATAATCCTTATCATCCAACTCATAATCCACATGGTGTTA 124
|||| ||||||||||||||||||||||||| ||||||||||||||||||||| || ||||
Sbjct 83 ATGGCTGGAAAGCTTACGACAATAATCCTTTTCATCCAACTCATAATCCACAAGGAGTTA 142
Query 125 TTCAAATGGGTCTTGCCGAAAATCAACTTTGTTCAGATTTGATCAAAGAATGGAT-AAGG 183
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 143 TTCAAATGGGTCTCGCCGAAAATCAACTTTGTTCAGATTTGATCAAAGAATGGATAAAGG 202
Query 184 AAAAATCCACAAGCATCTATTTGCACGGCGGAGGGAATTGACTCTTTCTCCGACATTGCT 243
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 203 -AAAATCCACAGGCATCTATTTGTACGGCGGAGGGAATTGACTCTTTCTCCGACATTGCT 261
Query 244 GTTTTTCAAGACTATCACGGTCTCAAACAATTTAGACAGGCGATTGCGGCGTTTATGGAG 303
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 262 GTTTTTCAAGATTATCACGGTCTCAAACAATTTAGACAGGCGATTGCGACGTTTATGGAG 321
Query 304 AGAGCGAGAGGCGGACGGGTGAGTTTTGAGGCGGAGAGGGTGGTGATGAGCGGAGGAGCC 363
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 322 AGAGCGAGAGGCGGGCGGGTGAGGTTTGAGGCGGAGAGGGTGGTGATGAGCGGAGGAGCC 381
Query 364 ACCGGAGCAAATGAGACGCTCATGTTCTGTCTTGCTGATCCCGGCGATGCTTTTCTCGTC 423
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 382 ACCGGAGCAAATGAGACGATCATGTTCTGTCTTGCTGATCCCGGCGACGCTTTTCTCGTC 441
Query 424 CCTACTCCATATTATGCAGCATTCGACAGAGACTTAAGGTGGAGAACTGGAATTAGAATA 483
|||||||| |||||||| |||||||| |||||||||||||||||||||||| ||||||||
Sbjct 442 CCTACTCCTTATTATGCTGCATTCGATAGAGACTTAAGGTGGAGAACTGGAGTTAGAATA 501
Query 484 ATCCCTGTGGAATGTAACAGCTCAAACAATTTCCAGGTTACAAAACAAGCCCTAGAATCA 543
||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 502 ATCCCTGTGGAGTGTAGCAGCTCAAACAATTTCCAGATTACAAAACAAGCCCTAGAATCA 561
Query 544 ACGTATCTTAAGGCCCAAGAAACCGGTATCAAGATCAAAGGCCTGATAATCGCAAACCCA 603
|||| ||||||||||||||||||||||||||||||||||||||| || | | |
Sbjct 562 GCGTACCTTAAGGCCCAAGAAACCGGTATCAAGATCAAAGGCCTG---AT--C--A-TC- 612
Query 604 TCAAACCCTCTTGGAACATCTCTTGATCGAGAAACTCTTGAAAGCCTTGTCAGCTTCATC 663
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 613 TCAAACCCTCTTGGAACATCTCTCGATCGAGAAACTCTTGAAAGCCTTGTCAGCTTCATC 672
Query 664 AACGACAAACAAATTCATTTAGTATGCGACGAAATCTACGCAGCAACGGTTTTTGCAGAA 723
|||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 673 AACGACAAGCAAATTCACTTAGTATGCGACGAAATATACGCAGCAACGGTTTTTGCGGAA 732
Query 724 CCGAAATTCATCAGTGTTGCAGAGATCATCCTAGAGATGGT-TCATGTTAACCGTGATCT 782
||| |||||||||||||||||||||||||| |||||| || | ||||||||||||||||
Sbjct 733 CCGGGATTCATCAGTGTTGCAGAGATCATCCAAGAGAT-GTATTATGTTAACCGTGATCT 791
Query 783 GATCCATATCGTTTACAGTCTTTCAAAGGACATGGGTCTCCCCGGTTTCCGGGTTGGAGT 842
||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 792 GATTCATATCGTCTACAGTCTTTCAAAGGACATGGGTCTTCCCGGTTTCCGGGTTGGAGT 851
Query 843 GGTTTACTCTTACAACGATGTTGTTGTGTCCTGCGCAAGGAAGATGTCGAGTTTTGGATT 902
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 852 GGTTTACTCTTACAACGATGTTGTTGTGTCCTGCGCAAGGAGGATGTCGAGTTTTGGATT 911
Query 903 GGTCTCGTCGCAGATACAAAGTTTTGTAGCTGCTATGTTGTCTGATCAAAGGTTTGTCGA 962
|||||||||||||| |||||||||| |||||||||||||||||||||| || ||||||||
Sbjct 912 GGTCTCGTCGCAGACACAAAGTTTTCTAGCTGCTATGTTGTCTGATCAGAGTTTTGTCGA 971
Query 963 TAACATTCTTGTTGAGGTTTC-AAAGAGAGTAGCAAAGAGACACCATATGTTCACGGAAG 1021
|||| |||||||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 972 TAACTTTCTTGTTGAGGTTTCGAAA-AGAGTAGCGAAGAGACACCATATGTTCACGGAAG 1030
Query 1022 GGCTTGAAGAGATGGGGATTTCTTGCTTGAGAAGCAACGCAGGTTTATACGTCTTGATGG 1081
|||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct 1031 GGCTTGAAGAGATGGGGATTTCTTGCTTGAGAAGCAACGCGGGTTTATTCGTTTTGATGG 1090
Query 1082 ATTTAAGGCAGATGCTTAAGGATCAGACATTTGAGTCCGAAATAGCGCTTTGGCGAGTGA 1141
|||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 1091 ATTTGAGGCATATGCTTAAGGATCAGACATTTGATTCCGAAATGGCGCTTTGGCGAGTTA 1150
Query 1142 TTATCAATAAGGTCAAGATTAATATCTCTCCTGGCTCGTCGTTTCACTGCTCTGAGCCAG 1201
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1151 TTATCAATAAGGTCAAGATTAATGTCTCTCCTGGCTCGTCGTTTCACTGCTCTGAGCCTG 1210
Query 1202 GTTGGTTCCGAGTTTGCTTTGCTAATATGGACGAAGACACACTCCAAATTGGACTTGAGA 1261
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1211 GTTGGTTCCGAGTCTGCTTTGCTAATATGGACGAAGACACACTCCAAATTGCACTTGA-A 1269
Query 1262 -GAATCAAAGACTTTGTACTTGGAGACAAAGCCTCCAAGAACAAGAATTGTAACTGCATT 1320
|||||||||||||||| ||||||||| |||| |||||||||||| ||||||||||||
Sbjct 1270 CGAATCAAAGACTTTGTGGTTGGAGACAGAGCCAACAAGAACAAGAACTGTAACTGCATT 1329
Query 1321 TGCAACAACAAAAGGGAGAACAAGAAACGTAAGAGTTTTCAAAAGAATCTCAAACTGAGT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1330 TGCAACAACAAAAGGGAGAACAAGAAACGTAAGAGTTTTCAAAAGAATCTCAAGCTGAGT 1389
Query 1381 TTCTCTTCGATGATGTATGATGAACATGTTAGGTCACCAAAGTTGATGTCCCCTCATTCA 1440
|| |||||||||| ||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 1390 TTATCTTCGATGAGGTACGAGGAACATGTTAGGTCACCAAAGTTGATGTCTCCTCATTCA 1449
Query 1441 CCGTTGCTCCGAGCTTAA 1458
|| ||||| |||||||||
Sbjct 1450 CCATTGCTTCGAGCTTAA 1467
> AT5G28360.1 | Symbols: ACS3 | ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE
SYNTHASE LIKE PSEUDOGENE); 1-aminocyclopropane-1-carboxylate
synthase/ catalytic/ pyridoxal phosphate binding /
transferase, transferring nitrogenous groups | chr5:10328403-10329702
REVERSE LENGTH=507
Length=507
Score = 671 bits (363), Expect = 0.0
Identities = 413/437 (95%), Gaps = 4/437 (1%)
Strand=Plus/Plus
Query 6 TCAGCTACTATCCAAATTAGCCTCT-AGTGACAAACACGGAGAAGCTTCGCCGTACTTTG 64
||| || ||||||||||||| || | ||||||||||| ||||||||||||||||||||
Sbjct 24 TCAACTTCTATCCAAATTAG-CTTTGAGTGACAAACATGGAGAAGCTTCGCCGTACTTCC 82
Query 65 ATGGTTGGAAAGCTTACGACAATAATCCTTATCATCCAACTCATAATCCACATGGTGTTA 124
|||| ||||||||||||||||||||||||| ||||||||||||||||||||| || ||||
Sbjct 83 ATGGCTGGAAAGCTTACGACAATAATCCTTTTCATCCAACTCATAATCCACAAGGAGTTA 142
Query 125 TTCAAATGGGTCTTGCCGAAAATCAACTTTGTTCAGATTTGATCAAAGAATGGAT-AAGG 183
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 143 TTCAAATGGGTCTCGCCGAAAATCAACTTTGTTCAGATTTGATCAAAGAATGGATAAAGG 202
Query 184 AAAAATCCACAAGCATCTATTTGCACGGCGGAGGGAATTGACTCTTTCTCCGACATTGCT 243
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 203 -AAAATCCACATGCATCTATTTGTACGGCGGAGGGAATTGACTCTTTCTCCGACATTGCT 261
Query 244 GTTTTTCAAGACTATCACGGTCTCAAACAATTTAGACAGGCGATTGCGGCGTTTATGGAG 303
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 262 GTTTTTCAAGATTATCACGGTCTCAAACAATTTAGACAGGCGATTGCGACGTTTATGGAG 321
Query 304 AGAGCGAGAGGCGGACGGGTGAGTTTTGAGGCGGAGAGGGTGGTGATGAGCGGAGGAGCC 363
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 322 AGAGCGAGAGGCGGGCGGGTGAGGTTTGAGGCGGAGAGGGTGGTGATGAGCGGAGGAGCC 381
Query 364 ACCGGAGCAAATGAGACGCTCATGTTCTGTCTTGCTGATCCCGGCGATGCTTTTCTCGTC 423
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 382 ACCGGAGCAAATGAGACGATCATGTTCTGTCTTGCTGATCCCGGCGACGCTTTTCTCGTC 441
Query 424 CCTACTCCATATTATGC 440
|||||||| ||||||||
Sbjct 442 CCTACTCCTTATTATGC 458
> AT3G49700.1 | Symbols: ETO3, ACS9, AtACS9 | 1-aminocyclopropane-1-carboxylate
synthase 9 | chr3:18434470-18436141 REVERSE
LENGTH=1413
Length=1413
Score = 56.5 bits (30), Expect = 7e-07
Identities = 34/36 (94%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 122 TTATTCAAATGGGTCTTGCCGAAAATCAACTTTGTT 157
|||||||||||||||||||||||||||| || ||||
Sbjct 119 TTATTCAAATGGGTCTTGCCGAAAATCAGCTATGTT 154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71887180440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5