BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899139

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G46410.1 | Symbols: CPC | Homeodomain-like superfamily prote...   200    5e-51


> AT2G46410.1 | Symbols: CPC | Homeodomain-like superfamily protein 
| chr2:19049172-19050341 REVERSE LENGTH=584
Length=584

 Score =  200 bits (108),  Expect = 5e-51
 Identities = 166/194 (86%), Gaps = 4/194 (2%)
 Strand=Plus/Plus

Query  52   TCTTGTTCAGAAGAGGTGACTAGTATTGAGTGGAAAGCTGTGACTATGTCAGAAGAAGAA  111
            |||||||| |||||||||| |||||| || ||| |||||||||  |||||||||||||||
Sbjct  223  TCTTGTTCCGAAGAGGTGAGTAGTATCGAATGGGAAGCTGTGAAGATGTCAGAAGAAGAA  282

Query  112  GAAGATCTCATTTTTCGGATGTACAAACTTGTCGGTGATAGGTGGCCA-TTGATTGCCGG  170
            ||||||||||||| ||||||||| ||||| || || || ||||||  | ||||| |||||
Sbjct  283  GAAGATCTCATTTCTCGGATGTATAAACTCGTTGGCGACAGGTGGG-AGTTGATCGCCGG  341

Query  171  CAGGATCCCGGGGCGTACGCCGGAGGTGATTGAGAGGTACTGGCTTATGAAACACGGCTT  230
             ||||||||||| || |||||||||| ||| ||||| || |||||||||||||||||| |
Sbjct  342  AAGGATCCCGGGACGGACGCCGGAGGAGATAGAGAGATATTGGCTTATGAAACACGGCGT  401

Query  231  C-TTTTTCGCAAAC  243
            | ||||| || |||
Sbjct  402  CGTTTTT-GCCAAC  414



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11159440278


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5