BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg899149 Length=1146 Score E Sequences producing significant alignments: (Bits) Value AT2G25410.1 | Symbols: | RING/U-box superfamily protein | chr2... 1559 0.0 AT2G25409.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 695 0.0 AT3G61721.1 | Symbols: | pseudogene of protein binding / zinc ... 490 1e-137 AT3G61723.1 | Symbols: | PHD finger protein | chr3:22846405-22... 254 2e-66 > AT2G25410.1 | Symbols: | RING/U-box superfamily protein | chr2:10814470-10815994 FORWARD LENGTH=1211 Length=1211 Score = 1559 bits (844), Expect = 0.0 Identities = 1052/1150 (91%), Gaps = 24/1150 (2%) Strand=Plus/Plus Query 1 ATGACCTCAAAACAActccctctccttctcctccatctctttttcttcttcttcttcttc 60 ||||||||||||| ||| ||||| | |||||| ||||| ||||| | |||||||| Sbjct 1 ATGACCTCAAAACTACTTCCTCT-C--CTCCTCAATCTC---ATCTTC--C-TCTTCTTC 51 Query 61 ttcttGCCCCTCCTAAACGCATCAGAACCAAAACCTTGCTACAGTTTCTCATGTGGCCAA 120 | || ||||| ||||||||||| |||| ||||||||||||||||||||||||| | ||| Sbjct 52 -T-TT-CCCCTTCTAAACGCATCCGAACAAAAACCTTGCTACAGTTTCTCATGTAGTCAA 108 Query 121 GGGAGCGTCGTTGTTCGTTTCCCTTTCTCGCTATTCCCCTACCAACCTGAGTCCTGTGGC 180 | ||||||||||| ||||||||||||||| |||||| |||| ||||||||||| || ||| Sbjct 109 GAGAGCGTCGTTGCTCGTTTCCCTTTCTCCCTATTCTCCTATCAACCTGAGTCATGCGGC 168 Query 181 TACTCAGGATTCAACCTCCTATGCACAGGTGATGGCAAGACTGCCTTAAAGCTTCCTAAG 240 |||||||||||||||||| |||||| || ||||| ||| ||| ||||||||||||||||| Sbjct 169 TACTCAGGATTCAACCTCATATGCAAAGATGATGCCAATACTACCTTAAAGCTTCCTAAG 228 Query 241 TCCGAACCATTTCTTG-TCAGAGAGATCGACTATGAATCACAGCGTATTCGCCTCAACGA 299 || ||||| ||||||| | || ||||||||||||||| |||||||||||||||||||||| Sbjct 229 TCTGAACCCTTTCTTGTTAAG-GAGATCGACTATGAAACACAGCGTATTCGCCTCAACGA 287 Query 300 CCCTGAGAATTGTTTGGCCAGACGGCTTCTTAACTTTGACCCTTCGGGGTCTCCTTTTTC 359 |||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| Sbjct 288 CCCTGAGAATTGTTTGGCCAGACGACTTCTTAACTTTGACCCTTCAGGATCTCCTTTTTC 347 Query 360 TCCTCTTCGCTCTCGCAACTACACGTTCTTGATTTGTCCTAAGGAAGCGAACGTCACTGC 419 | |||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 348 TTTTCTTCGCTCTCGTAACTACACGTTCTTGATCTGTCCTAAGGAAGCGAACATCACTGC 407 Query 420 ATCCTTCAGAGCCATCGATTGCCTTGGTAACT-CCACTTCCTCATTCTTCGTCGTGCAG- 477 |||||||||||| ||||||||||||||||| | |||||||||| ||||| || |||||| Sbjct 408 ATCCTTCAGAGCTATCGATTGCCTTGGTAA-TACCACTTCCTCCTTCTTTGTTGTGCAGT 466 Query 478 TTG-G-ATCTGGTTGGTTCGATGCCGTCTTCTTGTCAGACCTTTAAGACATTACCTCTTC 535 ||| | ||| | ||||||||||| ||||||||||| | |||||||| ||||||||||| Sbjct 467 TTGAGAATC---TCGGTTCGATGCCATCTTCTTGTCACATCTTTAAGATATTACCTCTTC 523 Query 536 CATTTTCTTGGTCTGTCGCCTACACGGCATTCCCCGGTGGCCAAAACAGTCGAGACCTGT 595 |||||||||||| ||||||||||||| ||| ||| | ||||||||||||||||||| ||| Sbjct 524 CATTTTCTTGGTTTGTCGCCTACACGACATACCCTGATGGCCAAAACAGTCGAGACATGT 583 Query 596 GGCTCAAATGGGACTCGCCGGATTGCAGAGATTGTGAGAGGAGGACTAATTCAAGATGTG 655 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 584 GGCTCAAATGGGACTCGCCGGATTGTAGAGATTGTGAGAGGAGAACTAATTCAAGATGTG 643 Query 656 GATTCAAAAACAATACTTCGC-TCCAAGTCGAATGCTTCAGTTCTGCTAACCCCGGACTT 714 ||||||||||||||||||| | | |||||||||||||||||||||| |||||| |||||| Sbjct 644 GATTCAAAAACAATACTTCCCAT-CAAGTCGAATGCTTCAGTTCTGTTAACCCTGGACTT 702 Query 715 CACAACACAGGCTTACAAGTACTAAAGATAATCTGCCTCTCCCTAGTCGGACCACTCACG 774 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 703 CACAACACAGGCTTACAAGTACTAAAGATAATGTGCCTCTCCCTAGTCGGACCACTCACC 762 Query 775 GCCTTGACTTTTTGTGTCGGTCTTGTCATGTGCAGTTCCGAGAGAGTCTCTTCACAGATA 834 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 763 GCCTTGACTTTTTGTGTCGGTCTTGTCATGTGCAGTTCCGAGAGAGTCTCTTCACAGATA 822 Query 835 CAACACGCAGTGGTTGCACGCCTTTCTGGATCCGTAACGCCGCAGCCAAGCGATGAAGTC 894 ||||| ||||||||||||||||||||||||||||||||| ||||||||||| | |||||| Sbjct 823 CAACAAGCAGTGGTTGCACGCCTTTCTGGATCCGTAACGTCGCAGCCAAGCAACGAAGTC 882 Query 895 GCAAGGACGGGTCTGGATGAGTCTACGATTGAGTCATACAAGAAAGTTGAGTTAGGGGAG 954 ||||||| ||||| ||||||||||| |||||||||||||||||||||||| |||||||| Sbjct 883 GCAAGGATAGGTCTCGATGAGTCTACAATTGAGTCATACAAGAAAGTTGAGCTAGGGGAG 942 Query 955 AGTAGGAGACTCCCGACCGGATCAAATGATGTTGTATGTCCCATTTGTTTGTCAGAATAC 1014 |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| Sbjct 943 AGTAGGAGACTCCCGACCGGGTCAAATGATGTTGTTTGTCCCATTTGTTTGTCGGAATAT 1002 Query 1015 GCAACCAAAGAAACTGTTAGGTGTTTACCTGAATGTGAACATTGCTTCCATACCGAATGT 1074 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1003 GCAACCAAAGAAACTGTTAGGTGTTTACCTGAATGTGAACATTGCTTCCATACTGAATGT 1062 Query 1075 ATTGATGCGTGGCTCAAGTTGCATAGTTCTTGCCCGGTTTGTCGGAGTAATCCATCTCCT 1134 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1063 ATTGATGCGTGGCTCAAGTTGCATAGTTCCTGCCCGGTTTGTCGGAGTAATCCATCTCCT 1122 Query 1135 GCGCGGGATT 1144 ||| |||| Sbjct 1123 TTGCGCGATT 1132 > AT2G25409.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:10815362-10815995 REVERSE LENGTH=634 Length=634 Score = 695 bits (376), Expect = 0.0 Identities = 416/436 (95%), Gaps = 0/436 (0%) Strand=Plus/Minus Query 709 GGACTTCACAACACAGGCTTACAAGTACTAAAGATAATCTGCCTCTCCCTAGTCGGACCA 768 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 516 GGACTTCACAACACAGGCTTACAAGTACTAAAGATAATGTGCCTCTCCCTAGTCGGACCA 457 Query 769 CTCACGGCCTTGACTTTTTGTGTCGGTCTTGTCATGTGCAGTTCCGAGAGAGTCTCTTCA 828 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 456 CTCACCGCCTTGACTTTTTGTGTCGGTCTTGTCATGTGCAGTTCCGAGAGAGTCTCTTCA 397 Query 829 CAGATACAACACGCAGTGGTTGCACGCCTTTCTGGATCCGTAACGCCGCAGCCAAGCGAT 888 ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 396 CAGATACAACAAGCAGTGGTTGCACGCCTTTCTGGATCCGTAACGTCGCAGCCAAGCAAC 337 Query 889 GAAGTCGCAAGGACGGGTCTGGATGAGTCTACGATTGAGTCATACAAGAAAGTTGAGTTA 948 ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||| || Sbjct 336 GAAGTCGCAAGGATAGGTCTCGATGAGTCTACAATTGAGTCATACAAGAAAGTTGAGCTA 277 Query 949 GGGGAGAGTAGGAGACTCCCGACCGGATCAAATGATGTTGTATGTCCCATTTGTTTGTCA 1008 |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 276 GGGGAGAGTAGGAGACTCCCGACCGGGTCAAATGATGTTGTTTGTCCCATTTGTTTGTCG 217 Query 1009 GAATACGCAACCAAAGAAACTGTTAGGTGTTTACCTGAATGTGAACATTGCTTCCATACC 1068 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 216 GAATATGCAACCAAAGAAACTGTTAGGTGTTTACCTGAATGTGAACATTGCTTCCATACT 157 Query 1069 GAATGTATTGATGCGTGGCTCAAGTTGCATAGTTCTTGCCCGGTTTGTCGGAGTAATCCA 1128 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 156 GAATGTATTGATGCGTGGCTCAAGTTGCATAGTTCCTGCCCGGTTTGTCGGAGTAATCCA 97 Query 1129 TCTCCTGCGCGGGATT 1144 |||||| ||| |||| Sbjct 96 TCTCCTTTGCGCGATT 81 > AT3G61721.1 | Symbols: | pseudogene of protein binding / zinc ion binding/RING-H2 finger protein | chr3:22845746-22846569 FORWARD LENGTH=403 Length=403 Score = 490 bits (265), Expect = 1e-137 Identities = 292/305 (96%), Gaps = 1/305 (0%) Strand=Plus/Minus Query 815 AGAGAGTCTCTTCACAGATACAACACGCAGTGGTTGCACGCCTTTCTGGATCCGTAACGC 874 ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 401 AGAGAGTCTCTTCCCAGATACAACACGCAGTGGTTGCACGCCTCTCTGGATCCGTAATGC 342 Query 875 CGCAGCCAAGCGATGAAGTCGCAAGGACGGGTCTGGATGAGTCTACGATTGAGTCATACA 934 ||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||||| Sbjct 341 CGCAGCCAAGCGAGGAAGTCGCGAGGACAGGTCTCGATGAGTCTACGATTGAGTCATACA 282 Query 935 AGAAAGTTGAGTTAGGGGAGAGTAGGAGACTCCCGACCGGATCAAATGATGTTGTATGTC 994 ||||||||||| |||||||||||||||||||||||||||| || | |||||||||||||| Sbjct 281 AGAAAGTTGAGCTAGGGGAGAGTAGGAGACTCCCGACCGGGTCCAGTGATGTTGTATGTC 222 Query 995 CCATTTGTTTGTCAGAATACGCAACCAAAGAAACTGTTAGGTGTTTACCTGAATGTGAAC 1054 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 221 CCATTTGTTTGTCGGAATACGCAACCAAAGAAACTGTTAGGTGTTTACCTGAATGTGAAC 162 Query 1055 ATTGCTTCCATACCGAATGTATTGATGCGTGGCTCAAGTTGCATAGTTCTTGCCCGGTTT 1114 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 161 ATTGCTTCCATACCGAATGTATTGATGCGTGGCTCAAGTTGCATAGTTCT-GCCCGGTTT 103 Query 1115 GTCGG 1119 ||||| Sbjct 102 GTCGG 98 > AT3G61723.1 | Symbols: | PHD finger protein | chr3:22846405-22846925 REVERSE LENGTH=424 Length=424 Score = 254 bits (137), Expect = 2e-66 Identities = 155/164 (95%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 811 TCCGAGAGAGTCTCTTCACAGATACAACACGCAGTGGTTGCACGCCTTTCTGGATCCGTA 870 ||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 258 TCCTAGAGAGTCTCTTCCCAGATACAACACGCAGTGGTTGCACGCCTCTCTGGATCCGTA 317 Query 871 ACGCCGCAGCCAAGCGATGAAGTCGCAAGGACGGGTCTGGATGAGTCTACGATTGAGTCA 930 | ||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||| Sbjct 318 ATGCCGCAGCCAAGCGAGGAAGTCGCGAGGACAGGTCTCGATGAGTCTACGATTGAGTCA 377 Query 931 TACAAGAAAGTTGAGTTAGGGGAGAGTAGGAGACTCCCGACCGG 974 ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 378 TACAAGAAAGTTGAGCTAGGGGAGAGTAGGAGACTCCCGACCGG 421 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56224610400 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5