BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899149
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25410.1 | Symbols: | RING/U-box superfamily protein | chr2... 1559 0.0
AT2G25409.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 695 0.0
AT3G61721.1 | Symbols: | pseudogene of protein binding / zinc ... 490 1e-137
AT3G61723.1 | Symbols: | PHD finger protein | chr3:22846405-22... 254 2e-66
> AT2G25410.1 | Symbols: | RING/U-box superfamily protein | chr2:10814470-10815994
FORWARD LENGTH=1211
Length=1211
Score = 1559 bits (844), Expect = 0.0
Identities = 1052/1150 (91%), Gaps = 24/1150 (2%)
Strand=Plus/Plus
Query 1 ATGACCTCAAAACAActccctctccttctcctccatctctttttcttcttcttcttcttc 60
||||||||||||| ||| ||||| | |||||| ||||| ||||| | ||||||||
Sbjct 1 ATGACCTCAAAACTACTTCCTCT-C--CTCCTCAATCTC---ATCTTC--C-TCTTCTTC 51
Query 61 ttcttGCCCCTCCTAAACGCATCAGAACCAAAACCTTGCTACAGTTTCTCATGTGGCCAA 120
| || ||||| ||||||||||| |||| ||||||||||||||||||||||||| | |||
Sbjct 52 -T-TT-CCCCTTCTAAACGCATCCGAACAAAAACCTTGCTACAGTTTCTCATGTAGTCAA 108
Query 121 GGGAGCGTCGTTGTTCGTTTCCCTTTCTCGCTATTCCCCTACCAACCTGAGTCCTGTGGC 180
| ||||||||||| ||||||||||||||| |||||| |||| ||||||||||| || |||
Sbjct 109 GAGAGCGTCGTTGCTCGTTTCCCTTTCTCCCTATTCTCCTATCAACCTGAGTCATGCGGC 168
Query 181 TACTCAGGATTCAACCTCCTATGCACAGGTGATGGCAAGACTGCCTTAAAGCTTCCTAAG 240
|||||||||||||||||| |||||| || ||||| ||| ||| |||||||||||||||||
Sbjct 169 TACTCAGGATTCAACCTCATATGCAAAGATGATGCCAATACTACCTTAAAGCTTCCTAAG 228
Query 241 TCCGAACCATTTCTTG-TCAGAGAGATCGACTATGAATCACAGCGTATTCGCCTCAACGA 299
|| ||||| ||||||| | || ||||||||||||||| ||||||||||||||||||||||
Sbjct 229 TCTGAACCCTTTCTTGTTAAG-GAGATCGACTATGAAACACAGCGTATTCGCCTCAACGA 287
Query 300 CCCTGAGAATTGTTTGGCCAGACGGCTTCTTAACTTTGACCCTTCGGGGTCTCCTTTTTC 359
|||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 288 CCCTGAGAATTGTTTGGCCAGACGACTTCTTAACTTTGACCCTTCAGGATCTCCTTTTTC 347
Query 360 TCCTCTTCGCTCTCGCAACTACACGTTCTTGATTTGTCCTAAGGAAGCGAACGTCACTGC 419
| |||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 348 TTTTCTTCGCTCTCGTAACTACACGTTCTTGATCTGTCCTAAGGAAGCGAACATCACTGC 407
Query 420 ATCCTTCAGAGCCATCGATTGCCTTGGTAACT-CCACTTCCTCATTCTTCGTCGTGCAG- 477
|||||||||||| ||||||||||||||||| | |||||||||| ||||| || ||||||
Sbjct 408 ATCCTTCAGAGCTATCGATTGCCTTGGTAA-TACCACTTCCTCCTTCTTTGTTGTGCAGT 466
Query 478 TTG-G-ATCTGGTTGGTTCGATGCCGTCTTCTTGTCAGACCTTTAAGACATTACCTCTTC 535
||| | ||| | ||||||||||| ||||||||||| | |||||||| |||||||||||
Sbjct 467 TTGAGAATC---TCGGTTCGATGCCATCTTCTTGTCACATCTTTAAGATATTACCTCTTC 523
Query 536 CATTTTCTTGGTCTGTCGCCTACACGGCATTCCCCGGTGGCCAAAACAGTCGAGACCTGT 595
|||||||||||| ||||||||||||| ||| ||| | ||||||||||||||||||| |||
Sbjct 524 CATTTTCTTGGTTTGTCGCCTACACGACATACCCTGATGGCCAAAACAGTCGAGACATGT 583
Query 596 GGCTCAAATGGGACTCGCCGGATTGCAGAGATTGTGAGAGGAGGACTAATTCAAGATGTG 655
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 584 GGCTCAAATGGGACTCGCCGGATTGTAGAGATTGTGAGAGGAGAACTAATTCAAGATGTG 643
Query 656 GATTCAAAAACAATACTTCGC-TCCAAGTCGAATGCTTCAGTTCTGCTAACCCCGGACTT 714
||||||||||||||||||| | | |||||||||||||||||||||| |||||| ||||||
Sbjct 644 GATTCAAAAACAATACTTCCCAT-CAAGTCGAATGCTTCAGTTCTGTTAACCCTGGACTT 702
Query 715 CACAACACAGGCTTACAAGTACTAAAGATAATCTGCCTCTCCCTAGTCGGACCACTCACG 774
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 703 CACAACACAGGCTTACAAGTACTAAAGATAATGTGCCTCTCCCTAGTCGGACCACTCACC 762
Query 775 GCCTTGACTTTTTGTGTCGGTCTTGTCATGTGCAGTTCCGAGAGAGTCTCTTCACAGATA 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 GCCTTGACTTTTTGTGTCGGTCTTGTCATGTGCAGTTCCGAGAGAGTCTCTTCACAGATA 822
Query 835 CAACACGCAGTGGTTGCACGCCTTTCTGGATCCGTAACGCCGCAGCCAAGCGATGAAGTC 894
||||| ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||
Sbjct 823 CAACAAGCAGTGGTTGCACGCCTTTCTGGATCCGTAACGTCGCAGCCAAGCAACGAAGTC 882
Query 895 GCAAGGACGGGTCTGGATGAGTCTACGATTGAGTCATACAAGAAAGTTGAGTTAGGGGAG 954
||||||| ||||| ||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 883 GCAAGGATAGGTCTCGATGAGTCTACAATTGAGTCATACAAGAAAGTTGAGCTAGGGGAG 942
Query 955 AGTAGGAGACTCCCGACCGGATCAAATGATGTTGTATGTCCCATTTGTTTGTCAGAATAC 1014
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 943 AGTAGGAGACTCCCGACCGGGTCAAATGATGTTGTTTGTCCCATTTGTTTGTCGGAATAT 1002
Query 1015 GCAACCAAAGAAACTGTTAGGTGTTTACCTGAATGTGAACATTGCTTCCATACCGAATGT 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1003 GCAACCAAAGAAACTGTTAGGTGTTTACCTGAATGTGAACATTGCTTCCATACTGAATGT 1062
Query 1075 ATTGATGCGTGGCTCAAGTTGCATAGTTCTTGCCCGGTTTGTCGGAGTAATCCATCTCCT 1134
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1063 ATTGATGCGTGGCTCAAGTTGCATAGTTCCTGCCCGGTTTGTCGGAGTAATCCATCTCCT 1122
Query 1135 GCGCGGGATT 1144
||| ||||
Sbjct 1123 TTGCGCGATT 1132
> AT2G25409.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:10815362-10815995
REVERSE LENGTH=634
Length=634
Score = 695 bits (376), Expect = 0.0
Identities = 416/436 (95%), Gaps = 0/436 (0%)
Strand=Plus/Minus
Query 709 GGACTTCACAACACAGGCTTACAAGTACTAAAGATAATCTGCCTCTCCCTAGTCGGACCA 768
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 516 GGACTTCACAACACAGGCTTACAAGTACTAAAGATAATGTGCCTCTCCCTAGTCGGACCA 457
Query 769 CTCACGGCCTTGACTTTTTGTGTCGGTCTTGTCATGTGCAGTTCCGAGAGAGTCTCTTCA 828
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 CTCACCGCCTTGACTTTTTGTGTCGGTCTTGTCATGTGCAGTTCCGAGAGAGTCTCTTCA 397
Query 829 CAGATACAACACGCAGTGGTTGCACGCCTTTCTGGATCCGTAACGCCGCAGCCAAGCGAT 888
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 396 CAGATACAACAAGCAGTGGTTGCACGCCTTTCTGGATCCGTAACGTCGCAGCCAAGCAAC 337
Query 889 GAAGTCGCAAGGACGGGTCTGGATGAGTCTACGATTGAGTCATACAAGAAAGTTGAGTTA 948
||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct 336 GAAGTCGCAAGGATAGGTCTCGATGAGTCTACAATTGAGTCATACAAGAAAGTTGAGCTA 277
Query 949 GGGGAGAGTAGGAGACTCCCGACCGGATCAAATGATGTTGTATGTCCCATTTGTTTGTCA 1008
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 276 GGGGAGAGTAGGAGACTCCCGACCGGGTCAAATGATGTTGTTTGTCCCATTTGTTTGTCG 217
Query 1009 GAATACGCAACCAAAGAAACTGTTAGGTGTTTACCTGAATGTGAACATTGCTTCCATACC 1068
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 GAATATGCAACCAAAGAAACTGTTAGGTGTTTACCTGAATGTGAACATTGCTTCCATACT 157
Query 1069 GAATGTATTGATGCGTGGCTCAAGTTGCATAGTTCTTGCCCGGTTTGTCGGAGTAATCCA 1128
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 156 GAATGTATTGATGCGTGGCTCAAGTTGCATAGTTCCTGCCCGGTTTGTCGGAGTAATCCA 97
Query 1129 TCTCCTGCGCGGGATT 1144
|||||| ||| ||||
Sbjct 96 TCTCCTTTGCGCGATT 81
> AT3G61721.1 | Symbols: | pseudogene of protein binding / zinc
ion binding/RING-H2 finger protein | chr3:22845746-22846569
FORWARD LENGTH=403
Length=403
Score = 490 bits (265), Expect = 1e-137
Identities = 292/305 (96%), Gaps = 1/305 (0%)
Strand=Plus/Minus
Query 815 AGAGAGTCTCTTCACAGATACAACACGCAGTGGTTGCACGCCTTTCTGGATCCGTAACGC 874
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 401 AGAGAGTCTCTTCCCAGATACAACACGCAGTGGTTGCACGCCTCTCTGGATCCGTAATGC 342
Query 875 CGCAGCCAAGCGATGAAGTCGCAAGGACGGGTCTGGATGAGTCTACGATTGAGTCATACA 934
||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct 341 CGCAGCCAAGCGAGGAAGTCGCGAGGACAGGTCTCGATGAGTCTACGATTGAGTCATACA 282
Query 935 AGAAAGTTGAGTTAGGGGAGAGTAGGAGACTCCCGACCGGATCAAATGATGTTGTATGTC 994
||||||||||| |||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 281 AGAAAGTTGAGCTAGGGGAGAGTAGGAGACTCCCGACCGGGTCCAGTGATGTTGTATGTC 222
Query 995 CCATTTGTTTGTCAGAATACGCAACCAAAGAAACTGTTAGGTGTTTACCTGAATGTGAAC 1054
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 CCATTTGTTTGTCGGAATACGCAACCAAAGAAACTGTTAGGTGTTTACCTGAATGTGAAC 162
Query 1055 ATTGCTTCCATACCGAATGTATTGATGCGTGGCTCAAGTTGCATAGTTCTTGCCCGGTTT 1114
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 161 ATTGCTTCCATACCGAATGTATTGATGCGTGGCTCAAGTTGCATAGTTCT-GCCCGGTTT 103
Query 1115 GTCGG 1119
|||||
Sbjct 102 GTCGG 98
> AT3G61723.1 | Symbols: | PHD finger protein | chr3:22846405-22846925
REVERSE LENGTH=424
Length=424
Score = 254 bits (137), Expect = 2e-66
Identities = 155/164 (95%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 811 TCCGAGAGAGTCTCTTCACAGATACAACACGCAGTGGTTGCACGCCTTTCTGGATCCGTA 870
||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 258 TCCTAGAGAGTCTCTTCCCAGATACAACACGCAGTGGTTGCACGCCTCTCTGGATCCGTA 317
Query 871 ACGCCGCAGCCAAGCGATGAAGTCGCAAGGACGGGTCTGGATGAGTCTACGATTGAGTCA 930
| ||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 318 ATGCCGCAGCCAAGCGAGGAAGTCGCGAGGACAGGTCTCGATGAGTCTACGATTGAGTCA 377
Query 931 TACAAGAAAGTTGAGTTAGGGGAGAGTAGGAGACTCCCGACCGG 974
||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 378 TACAAGAAAGTTGAGCTAGGGGAGAGTAGGAGACTCCCGACCGG 421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56224610400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5