BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899154
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61730.1 | Symbols: RMF | reduced male fertility | chr3:2284... 1659 0.0
AT5G36000.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1587 0.0
AT3G62500.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 438 4e-122
AT5G36001.1 | Symbols: | RING/U-box superfamily protein | chr5... 289 5e-77
> AT3G61730.1 | Symbols: RMF | reduced male fertility | chr3:22848427-22850475
REVERSE LENGTH=1065
Length=1065
Score = 1659 bits (898), Expect = 0.0
Identities = 1023/1081 (95%), Gaps = 17/1081 (2%)
Strand=Plus/Plus
Query 1 ATGAAG-CTGAGATCTGGTGATGTTGAAGGAGATAGTAGAGGGAAGAGGATCGTTCCGGT 59
|||||| | ||||||| |||||| |||||||||||||||||||||| ||| | ||||||
Sbjct 1 ATGAAGAC-GAGATCTAGTGATGCCGAAGGAGATAGTAGAGGGAAGATGATAGCTCCGGT 59
Query 60 GGGAGACGGAAATGGTGGACGGAAGAGAAAATTGGTGCAGAGCAACGAACAGAAGAACGA 119
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GGGAGAAGGAAATGGTGGACGGAAGAGAAAATTGGTGCAGAGCAACGAACAGAAGAACGA 119
Query 120 TCTTCAGAGAGACGAAGATGGTAGAGCGAAGAGAAGAATCGTTCAGAGCAGCGACCAGAA 179
| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 120 TATTCAGAGAGAAGAAGATGGTAGAGCTAAGAGAAGAATCGTTCAGAGCAGCGACCAGAA 179
Query 180 GAACGGGAAGATCCTCAGAGGAATTCATGGCTGTGTATCTCCTCGGTGCTCTGCTCAGAC 239
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 180 GAACGGGAAGATCCTCAGAGGAATTCGTGGCTGTGTATCTCCACGGTGCTCTGCTCAGAC 239
Query 240 TTACCAGTCTCGCTTCTCATGGTTTGAGCAAGATATATGGACATACATTTCAAGGTTTTT 299
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 240 TTACCAGTCTCGCTTTTCATGGTATGAGCAAGATATATGGACATACATTTCAAGGTTTTT 299
Query 300 GGATGGTAAATCACTGGTGAAGCTGGGAGCAACAAACAAATGGTTCTACAAGATCGCAAT 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 GGATGGTAAATCACTGGTGAAGCTGGGAGCAACAAACAAATGGTTCTATAAGATCGCAAT 359
Query 360 GGAGGATACTGTTTGGAGGTTTGCCTGCTTGCGTGATCTTCAGGTCCCTCAGCCGTTTCC 419
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 360 GGAGGATACTGTTTGGAGGTTTGCCTGCTTGCGTGATCTTCAGGTCCCTGTGCCGTTTCC 419
Query 420 CGTTTCTTCCACCTGGATTAAGATTTATGCTTCAGCTTTTGATGGGAGTCACTCTTACTT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGTTTCTTCCACCTGGATTAAGATTTATGCTTCAGCTTTTGATGGGAGTCACTCTTACTT 479
Query 480 GTTCCGTCAGAAGGAGAAGCATATTGATTGGATGCGGATTGGTGCCTTTGTTCTTGACTC 539
|||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 480 GTTCCGTCAGAAGGAGAAGC-----------AT----ATTGGTGCCTTTGTTCTTGACTC 524
Query 540 TCGAACTTCACTCCTGACTGAGAGTTTGAGTGGTCGACTGAAAGTCCCAAGGGAAGGAAC 599
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 525 TCGAACTTCACTCCTGACTGAGAGTTTGAGTGGTCGTCTGAAATTCCCAAGGGAAGGAAC 584
Query 600 CATAGAATGAATGTTACAATCTAGTGGTTCATGTGTTATCAACGACATCAAAAGCGGTAT 659
||||||| | ||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 585 CATAGAACGGATGTTACAATCCAGTGGTTCATGTCTTATCAACGACATCAAAAGCGGTAT 644
Query 660 TTGGATTGCGGATTTACAGCTTGTGCGTTGCCCTGTTTGTGACCTCAGTACCTGTGATGG 719
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 645 TTGGATTGCAGATTTACAGCTTGTACGTTGCCCTGTTTGTGACCTCAGTACCTGTGATGG 704
Query 720 AACAATGCAAACACTTGATGCTAGGCACATTGAACTGTTCCTTAGTGAAGGCTACAAAGA 779
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 705 AACAATGCAAACTCTTGATGCTAGGCACATTGAACTCTTCCTTAGTGAAGGCTACAAAGA 764
Query 780 TGGAAGCTGGGATTACAATCTTATTGGATCTCATAAGTTACAGAAAGACGCAAATGCAGC 839
||||||||||||||||||||| || |||||||||||||| |||||| |||||| ||||||
Sbjct 765 TGGAAGCTGGGATTACAATCTGATCGGATCTCATAAGTTGCAGAAAAACGCAAGTGCAGC 824
Query 840 TTGTGGAGCCATATTTGATCTCAAACACCTTAAAGAATCTTCATCCTCAGGTATTCTCAA 899
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 825 TTGTGGAGCCATATTTGACCTCAAACACCTTAAAGAATCTTCATATTCAGGTATTCTCAA 884
Query 900 CCTCAAGTCTTGGACCGGAGAGGCAGATGATTCCCAACCTAAAGCAGTTATCGCACCCCA 959
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 885 CCTCAAGTCTTGGACCGGAGAGTCAAATGATTCCCAACCTAAAGCAGTTATCGCACCCCA 944
Query 960 TGCAGTTGCTGTTCACACAAGATTGCAAGAAAACGAAGGAATCCTTGTGAAGTACCACAC 1019
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 945 CGCTGTTGCTGTTCACACAAGACTGCAAGAAAACGAAGGAATCCTTGTGAAGTACCACAC 1004
Query 1020 AATGAAAGCAGGAACAGACGGTGACATTGTTTCCATCAGAATCTCCCAGCAGCTTCTCTG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1005 AATGAAAGCAGGAACAGACGGTGACATTGTTTCCATCAGAATCTCCCAGCAACTTCTCTG 1064
Query 1080 A 1080
|
Sbjct 1065 A 1065
> AT5G36000.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: reduced male fertility (TAIR:AT3G61730.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:14139996-14141892
FORWARD LENGTH=1068
Length=1068
Score = 1587 bits (859), Expect = 0.0
Identities = 1003/1072 (94%), Gaps = 12/1072 (1%)
Strand=Plus/Plus
Query 9 GAGATCTGGTGATGTTGAAGGAGATAGTAGAGGGAAGAGGATCGTTCCGGTGGGAGACGG 68
|||||||||||||| |||||||||| ||||||||||| ||| | ||||||| |||||||
Sbjct 9 GAGATCTGGTGATGCCGAAGGAGATATTAGAGGGAAGATGATAGCTCCGGTGAGAGACGG 68
Query 69 AAATGGTGGACGGAAGAGAAAATTGGTGCAGAGCAACGAACAGAAGAACGATCTTCAGAG 128
||||||||||| ||||||||||||||| | | | | || |||||| |||||||
Sbjct 69 AAATGGTGGACAGAAGAGAAAATTGGT----A-C-A-G---AG--CAACGATATTCAGAG 116
Query 129 AGACGAAGATGGTAGAGCGAAGAGAAGAATCGTTCAGAGCAGCGACCAGAAGAACGGGAA 188
||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 117 AGACGAAGATGGTGGAGCAAAGAGAAGAATCATTCAGAGCAGCGACCAGAAGAACGGGAA 176
Query 189 GATCCTCAGAGGAATTCATGGCTGTGTATCTCCTCGGTGCTCTGCTCAGACTTACCAGTC 248
|||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 177 GATCCTGAGAGGAATCCATGGCTGTGTATCTCCTCGGTGCTCTGCTCCGACTTACCAGTC 236
Query 249 TCGCTTCTCATGGTTTGAGCAAGATATATGGACATACATTTCAAGGTTTTTGGATGGTAA 308
||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 237 TCGCTTCTCCTGGTATGAGCAAGATATATGGACATACATAACAAGGTTTTTGGATGGTAA 296
Query 309 ATCACTGGTGAAGCTGGGAGCAACAAACAAATGGTTCTACAAGATCGCAATGGAGGATAC 368
|||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 297 ATCATTGGTGAAGCTGGGAGCAACGAACAAATGGTTCTATAAGATTGCAATGGAGGATAC 356
Query 369 TGTTTGGAGGTTTGCCTGCTTGCGTGATCTTCAGGTCCCTCAGCCGTTTCCCGTTTCTTC 428
||||||||||||||| |||||||||||||||||||||||| || ||||||| ||||||||
Sbjct 357 TGTTTGGAGGTTTGCATGCTTGCGTGATCTTCAGGTCCCTGAGACGTTTCCAGTTTCTTC 416
Query 429 CACCTGGATTAAGATTTATGCTTCAGCTTTTGATGGGAGTCACTCTTACTTGTTCCGTCA 488
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 417 CACCTGGATTAAGATTTATGCTTCAGCTTTTGATGGGAGTCACTCTTACTTGTTCCACCA 476
Query 489 GAAGGAGAAGCATATTGATTGGATGCGGATTGGTGCCTTTGTTCTTGACTCTCGAACTTC 548
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 477 GAAGGAGAAGCATATTGATTGGATGCGTCTTGGTGCCTTTGTTCTTGACTCTCGAACTTC 536
Query 549 ACTCCTGACTGAGAGTTTGAGTGGTCGACTGAAAGTCCCAAGGGAAGGAACCATAGAATG 608
| ||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||
Sbjct 537 ATTCCTGACTGAGAGTTTGAGTGGTCGTCTGAAAGTCCCAACAGAAGGAACTATAGAACA 596
Query 609 AATGTTACAATCTAGTGGTTCATGTGTTATCAACGACATCAAAAGCGGTATTTGGATTGC 668
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 597 AATGTTACAATCCAGTGGTTCATGTCTTATCAACGACATCAAAAGCGGTATTTGGATTGC 656
Query 669 GGATTTACAGCTTGTGCGTTGCCCTGTTTGTGACCTCAGTACCTGTGATGGAACAATGCA 728
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 657 AGATTTACAGCTTTTGCGTTGCCCTCTTTGTGACCTCAGTACCTGTGATGGAACAATGCA 716
Query 729 AACACTTGATGCTAGGCACATTGAACTGTTCCTTAGTGAAGGCTACAAAGATGGAAGCTG 788
||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 717 AACTCTTGATGTTAGGCACATTGAACTCTTCCTTAGTGAAGGCTACAAAGATGGAAGCTG 776
Query 789 GGATTACAATCTTATTGGATCTCATAAGTTACAGAAAGACGCAAATGCAGCTTGTGGAGC 848
|||||| ||||| ||||||||||||||||| |||||||||||| |||||| ||||||||
Sbjct 777 GGATTATAATCTGATTGGATCTCATAAGTTGGAGAAAGACGCAAGTGCAGCCTGTGGAGC 836
Query 849 CATATTTGATCTCAAACACCTTAAAGAATCTTCATCCTCAGGTATTCTCAACCTCAAGTC 908
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 837 CATATTTGACCTCAAACACCTTAAAAAATCTTCATCCTCAGGTATTCTCAACCTCAAGTC 896
Query 909 TTGGACCGGAGAGGCAGATGATTCCCAACCTAAAGCAGTTATCGCACCCCATGCAGTTGC 968
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 897 TTGGACCGGAGAGGCAGATGATTCCCAACCTAAAGCAGTTATTGCACCCCATGCAGTTGC 956
Query 969 TGTTCACACAAGATTGCAAGAAAACGAAGGAATCCTTGTGAAGTACCACACAATGAAAGC 1028
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TGTTCACACAAGATTGCAACAAAACGAAGGAATCCTTGTGAAGTACCACACAATGAAAGC 1016
Query 1029 AGGAACAGACGGTGACATTGTTTCCATCAGAATCTCCCAGCAGCTTCTCTGA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AGGAACAGACGGTGACATTGTTTCCATCAGAATCTCCCAGCAGCTTCTCTGA 1068
> AT3G62500.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: SET domain protein 14 (TAIR:AT3G61740.1); Has 66 Blast
hits to 66 proteins in 11 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr3:23120423-23122222
FORWARD LENGTH=1125
Length=1125
Score = 438 bits (237), Expect = 4e-122
Identities = 266/280 (95%), Gaps = 2/280 (1%)
Strand=Plus/Plus
Query 719 GAACAATGCAAACACTTGATGCTAGGCACATTGAACTGTTCCTTAGTGAAGGCTACAAAG 778
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 683 GAACAATGCAAACTCTTGATGCTAGGCACATTGAACTCTTCCTTAGTGAAGGCTACAAAG 742
Query 779 ATGGAAGCTGGGATTACAATCTTATTGGATCTCATAAGTTACAGAAAGACGCAAATGCAG 838
||||||||||||| |||||||| ||||||||||||||||| |||||| |||||| |||||
Sbjct 743 ATGGAAGCTGGGACTACAATCTGATTGGATCTCATAAGTTGCAGAAAAACGCAAGTGCAG 802
Query 839 CTTGTGGAGCCATATTTGATCTCAAACACCTTAAAGAATCTTCATCCTCAGGTATTCTCA 898
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 803 CTTGTGGAGCCATATTTGACCTCAAACACCATAAAGAATCTTCATCCTCAGGTATTCTCA 862
Query 899 ACCTCAAGTCTTGGACCGGAGAGGCAGATGA-TTCCCAACCTAAAGCAGTTATCGCACCC 957
|||||||||||||||||||| || ||||| | ||||||||||||||||||||||||||||
Sbjct 863 ACCTCAAGTCTTGGACCGGACAGCCAGAT-ATTTCCCAACCTAAAGCAGTTATCGCACCC 921
Query 958 CATGCAGTTGCTGTTCACACAAGATTGCAAGAAAACGAAG 997
|||||||||||||||||||||||||||| |||||||||||
Sbjct 922 CATGCAGTTGCTGTTCACACAAGATTGCGAGAAAACGAAG 961
Score = 174 bits (94), Expect = 1e-42
Identities = 108/115 (94%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 504 TGATTGGATGCGGATTGGTGCCTTTGTTCTTGACTCTCGAACTTCACTCCTGACTGAGAG 563
||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 531 TGATTGGATGCCGATTGGTGCCTTTGTGCTTGATTCTCGAACTTCACTCCTGACTGAGAG 590
Query 564 TTTGAGTGGTCGACTGAAAGTCCCAAGGGAAGGAACCATAGAATGAATGTTACAA 618
|||||||||||| ||||||||||||| |||||||||||||||| | |||||||||
Sbjct 591 TTTGAGTGGTCGCCTGAAAGTCCCAAAGGAAGGAACCATAGAACGGATGTTACAA 645
> AT5G36001.1 | Symbols: | RING/U-box superfamily protein | chr5:14141641-14143436
FORWARD LENGTH=1581
Length=1581
Score = 289 bits (156), Expect = 5e-77
Identities = 160/162 (99%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 919 GAGGCAGATGATTCCCAACCTAAAGCAGTTATCGCACCCCATGCAGTTGCTGTTCACACA 978
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 GAGGCAGATGATTCCCAACCTAAAGCAGTTATTGCACCCCATGCAGTTGCTGTTCACACA 60
Query 979 AGATTGCAAGAAAACGAAGGAATCCTTGTGAAGTACCACACAATGAAAGCAGGAACAGAC 1038
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGATTGCAACAAAACGAAGGAATCCTTGTGAAGTACCACACAATGAAAGCAGGAACAGAC 120
Query 1039 GGTGACATTGTTTCCATCAGAATCTCCCAGCAGCTTCTCTGA 1080
||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTGACATTGTTTCCATCAGAATCTCCCAGCAGCTTCTCTGA 162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52911374430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5