BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899193
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09080.1 | Symbols: BIP3 | Heat shock protein 70 (Hsp 70) fa... 455 2e-127
> AT1G09080.1 | Symbols: BIP3 | Heat shock protein 70 (Hsp 70)
family protein | chr1:2929217-2931841 REVERSE LENGTH=2116
Length=2116
Score = 455 bits (246), Expect = 2e-127
Identities = 462/555 (83%), Gaps = 59/555 (11%)
Strand=Plus/Plus
Query 1 ATGTTAAAGGATTTCTTCGATGGCAAGGAACCCAACAAAGGAACTAACCCTGATGAGGTT 60
|||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||| |
Sbjct 1217 ATGTTAAAGGATTTCTTCGACGGCAAGGAACCCAGCAAAGGGACTAACCCTGATGAGGCT 1276
Query 61 TTGGCCTAT-ACAACCGCCGTCCAAGGTGGAGTATTAAGTGGTGAAGGTGGAGAAGAAAC 119
|||||||| | |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 GTGGCCTATGGC-GCCGCGGTCCAAGGTGGAGTATTAAGTGGTGAAGGTGGAGAAGAAA- 1334
Query 120 GCAAAACCTAAATTTATTGAAAACAAATATTTTGCTACTTGATGTTGCGCCTTTGCA-CC 178
| | | ||| |||| | || || |||||||||||||||||| | |
Sbjct 1335 -C---A-C-AAA-ATATT-----C---TA-----CTGCTTGATGTTGCGCCTTTG-AGTC 1373
Query 179 TCGGTATTGACACTGTCGGAGGCGTGATGACAAACATTATT-C------CTC-G-GATCC 229
|||||||||| |||||||||||||||||||||||||||||| | | | | |||||
Sbjct 1374 TCGGTATTGAAACTGTCGGAGGCGTGATGACAAACATTATTCCGAGGAACACGGTGATCC 1433
Query 230 CAACGAAGAAGTCTCAGGTGTTCACTACTTACCAAGATCAGCAAACTACTGTTACTATCA 289
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1434 CAACGAAGAAGTCTCAGGTGTTCACTACTTACCAAGATCAGCAAACTACTGTGACTATCA 1493
Query 290 ACGTCTATGAAG---AGATAAGCATGACGAAAGATAACCCCGAGCTCGGAAATTTCCAGC 346
||||||| |||| ||| |||||||||||||||||||| |||||| ||||| ||| | |
Sbjct 1494 ACGTCTACGAAGGCGAGAGAAGCATGACGAAAGATAACCGCGAGCTTGGAAAATTCGATC 1553
Query 347 TCACCGGCCTTCTTCCTGCACCTCGCAAGGAACAGTTTTTCATGGGGGTGCCACAGATGG 406
|||| ||| ||||||||||||| | | || | | | |||||||||| |
Sbjct 1554 TCACAGGCATTCTTCCTGCACC-C--AGGG----G------A-G----TGCCACAGATTG 1595
Query 407 AGGTGACTTTCGAAGTGGACGCAAATGGGATTCTGCAAGTGAACACC-GAAGACAAAGTT 465
||||||||||||||||||||||||||||||| ||||| ||||| | | ||||||||||||
Sbjct 1596 AGGTGACTTTCGAAGTGGACGCAAATGGGATCCTGCAGGTGAA-AGCTGAAGACAAAGTT 1654
Query 466 CCAAAGATGTCACAGTC-ACTTACAATAACGAACGATAAAGGTCGTTTGACAGGAGAAGA 524
| |||| |||||| || | ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1655 GCTAAGACGTCACAATCGA-TTACAATAACGAACGATAAAGGTCGTTTGACAGAAGAAGA 1713
Query 525 GATTGATGAAATGAT 539
|||||| ||||||||
Sbjct 1714 GATTGAGGAAATGAT 1728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26624097910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5