BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899199
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1509 0.0
> AT3G60980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:22565309-22566745 REVERSE LENGTH=1437
Length=1437
Score = 1509 bits (817), Expect = 0.0
Identities = 1113/1251 (89%), Gaps = 39/1251 (3%)
Strand=Plus/Plus
Query 1 ATGTCTCTGATCTGCCGCCTCAATCTTTGTCGGCGTTTCTCCACCGCCCTGCCAAGAAGA 60
|||||||||||| |||||||||||||| ||||||| |||| ||||||| |||||||||||
Sbjct 68 ATGTCTCTGATCGGCCGCCTCAATCTTGGTCGGCGCTTCTGCACCGCCGTGCCAAGAAGA 127
Query 61 GCGGAGGACATAATGTCAAACCCAGATTGTCGTCCC-GC-GCAGCTATGCTTGAGAGTCT 118
|||| ||||||||||||||||||||||| || ||| | | | ||||||||||| ||||
Sbjct 128 TCGGAAGACATAATGTCAAACCCAGATTGCCG-CCCTTCTG-ATCTATGCTTGAGGGTCT 185
Query 119 CGTACTTGATCAGATTCGTTGGAGATCTCGACACGGCGGCGAAGTACGCTCGTTTGGCTG 178
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 186 CGTACTTGATCAGATGCGTTGGGGATCTCGACACGGCGGCGAAGTACGCTCGTTTGGCTG 245
Query 179 TTTTCACC-GACATCAAATCGGAGGCCACAGCAGCAACATGTCAAGCCATCATCGGAGGC 237
|||||||| | ||||||||||||| | ||| || ||| ||||||| ||||||||||||||
Sbjct 246 TTTTCACCAG-CATCAAATCGGAGTCAACAACAACAATATGTCAATCCATCATCGGAGGC 304
Query 238 ATGTTGCAGAATAAAAGGCACGATGACGCTTACGATCTCTACGATTTCTTCTTCAATCA- 296
||||| | | ||||||||| | | |||||||| ||||||||||| ||||||||||||||
Sbjct 305 ATGTTACGGGATAAAAGGCTCAAGGACGCTTATGATCTCTACGAGTTCTTCTTCAATCAG 364
Query 297 CTTTAAGCTCAGACCCAACAGCCATTGCTGTAACTACATCATCGAATCTCGTTTCAAACA 356
| | || ||||||||||||||||||||||| |||||||||||||||||| ||||| ||||
Sbjct 365 CAT-AACCTCAGACCCAACAGCCATTGCTGGAACTACATCATCGAATCTGGTTTCCAACA 423
Query 357 AGGT-TTAGTTGACGAAGCTCT-CGGTTTCCACCACCGATCCATCGAAT-CTGGT-ATGG 412
|||| || || |||| ||||| | |||||||||||||| |||| ||| | ||| | ||
Sbjct 424 AGGTCTT-GTCAACGATGCTCTGCA-TTTCCACCACCGATGCATC-AATTCCGGTCA-GG 479
Query 413 TCCACGACTACCCAAGCAACGATACTTTCAGGGTCTTGACTAAAGGGTTAGTCCACTCCG 472
||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 480 TCCACGACTACCCAAGCGACGATTCTTTCAGGATCTTGACTAAAGGGTTAGTCCACTCCG 539
Query 473 GTCGATTAGACCAAGCCGAAGCCATGCTTAGAGACAGGACAGTCGATAGGATCATCTACC 532
|||| || ||||||||||||||| | ||||||| |||||||||| || | | || |||||
Sbjct 540 GTCGGTTGGACCAAGCCGAAGCCTTTCTTAGAGGCAGGACAGTCAATCGAACCACCTACC 599
Query 533 CAGATCACGTGGCGTACAACTATCTGATTCGCGGGTTTTTGGATCTTGGGAATTT-AGGC 591
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
Sbjct 600 CAGATCACGTGGCGTACAACAATCTGATTCGCGGGTTTTTGGATCTTGGAAATTTTAAA- 658
Query 592 AAGGCGAATCTAGTCCTGGACGAATTCAAACGCTTGTTTCTT-ATTACCCTCTCTGAGAC 650
||||||||||||||| ||| ||||||||||||||||||| || ||| |||| || |||||
Sbjct 659 AAGGCGAATCTAGTCTTGGGCGAATTCAAACGCTTGTTT-TTGATTGCCCTATCCGAGAC 717
Query 651 CAAAGATGATTTGCACCATTCAAACTATGAAAACAGAGTGGCATTCGTGATGGCCACATT 710
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 718 CAAAGATGATTTGCACCATTCAAACTATGAAAACAGAGTCGCATTCCTGATGGCCACATT 777
Query 711 CATGGAGTACTGGTTTAAGCAAGGTAAAGAGGTGGAAGCTATGGAGTGTTACAACCGTTC 770
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 778 CATGGAGTACTGGTTTAAGCAAGGTAAACAGGTGGAAGCTATGGAGTGTTACAACCGCTG 837
Query 771 TGTTCTATCAAACAGGTTACTGGCTTGTGCCGAAACGGCTAACGCCCTTTTGGTAGTCCT 830
||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||
Sbjct 838 TGTTCTATCAAACAGGTTACTGGTTTGTGCCGAAACGGGTAACGCCCTTTTGAAAGTCCT 897
Query 831 GCTCAAATACGGTGAGAAAAAACATGCTTGGGCATTGTACCATGATA-TCTTAGATAAAA 889
||||||||||||||| |||||| |||||||||||||||||||||| | ||||||||||||
Sbjct 898 GCTCAAATACGGTGAAAAAAAAAATGCTTGGGCATTGTACCATGA-ACTCTTAGATAAAA 956
Query 890 GT--A---G--AA------CTT--ACCCTGATACCATTAAGATAATGGTGGACGAGTGTT 934
| | | || ||| || ||||||||||||||||||||||||||||||| |
Sbjct 957 ATGGAACCGGTAAGGGTTGCTTGGACTCTGATACCATTAAGATAATGGTGGACGAGTGCT 1016
Query 935 TTGATATGGGTCGATTTAGGGAGGCTATGAAGACCTACAACAAGGCGAGAGCCAAGAACC 994
||||||||||| | ||||| ||||||||| |||||||||| ||||||||| ||||||||
Sbjct 1017 TTGATATGGGTTGGTTTAGTGAGGCTATGGAGACCTACAAAAAGGCGAGACCCAAGAACG 1076
Query 995 ATTACCTCAGTGACATATACATTTTTACAAAGTGTTGTC-AAAACGGGATGTTGTCAGAA 1053
| ||||||||||||| ||||||| |||||| || ||| | ||||| ||||||||||||||
Sbjct 1077 ACTACCTCAGTGACAAATACATTATTACAAGGTTTTG-CGAAAACAGGATGTTGTCAGAA 1135
Query 1054 GCAGAGTCTATCTTTGCTGATTCACTTGCTGATGATTTCGCATACATTGATGTTGACACT 1113
||||||||| | |||| ||||||||||||||||||||| | ||| ||||||||| |||||
Sbjct 1136 GCAGAGTCTGTTTTTGTTGATTCACTTGCTGATGATTTTGGATATATTGATGTTAACACT 1195
Query 1114 TCTAAAACAATGATGGATTCTTATGTGAAGGCTGGGAGAATCCATGATGCTATAAAAACC 1173
| |||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1196 TATAAAACAATGATCGATGCTTATGTGAAGGCTGGGAGAATACATGATGCTATAAAAACC 1255
Query 1174 TCCAACAAGATGATCGATGCAACTCTACAGGAGGTCTCCCATCTCTTTTGA 1224
||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1256 TCCAACAAGATGATCGATGCAACTCTAAAGGAGGTCTCCCATCTCTTTTGA 1306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60140252910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5