BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899207
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62080.2 | Symbols: | SNF7 family protein | chr3:22986174-2... 1964 0.0
> AT3G62080.2 | Symbols: | SNF7 family protein | chr3:22986174-22988777
FORWARD LENGTH=1666
Length=1666
Score = 1964 bits (1063), Expect = 0.0
Identities = 1205/1272 (95%), Gaps = 15/1272 (1%)
Strand=Plus/Plus
Query 1 ATGGATTCGGAAGCTGTGAAGGAGTTTATACGAAGGGAAGTTTCAGATTGGGACGATGAG 60
|||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 135 ATGGATCCTGAAGCTGTGAAGGAGTTTATACGAAGGGAAGTTCCAGATTGGGACGATGAG 194
Query 61 GTGGTGGCGACGGCTAGATTCAAGGCGTTTAGTGGGCAGAGATCCAATTGGGAACTTAAA 120
|||||||||| |||||||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 195 GTGGTGGCGATGGCTAGATTCAAGGCGTTTAGTGGTCAGAGGTCCGATTGGGAACTTAAA 254
Query 121 TTTCAGTTTTGGCGTGATTTGATCCTCAAGGTTTTGCGTCAGTTTGGGTTGTTCATCATT 180
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 255 TTTCAGTTTTGGCGTGATTTGATCATCAAGGTTTCGCGTCAGTTTGGGTTGTTCATCATT 314
Query 181 GATCCTGTTCAGGTGAAGAAGGCGTGGTTTAATCGAGGAGGAATAACGCCTTTATGCATT 240
|||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 315 GATCCTGTCCAGGTGAAGAAGGCGTGGTTTGATCGAGGAGGAATGACGCCTTTATGCATT 374
Query 241 GATCATGTTCTGTTATTGATGCATAGTGAAGGTGATGTTGTGCGGATTAGCGATATTGAT 300
||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct 375 GATGATGTTGTGTTATTGATGCATAGTGAAGGTGATGTTGTGCGGATTAGTGATCTCGAT 434
Query 301 GATCCGGGTAGTGGTCGTATTTCTCGTTTATTGAGGACAGTGAGGAACTTGATGGTTCAA 360
||||| ||||||||||||||| ||||||||||||||||||||| |||||| |||||||||
Sbjct 435 GATCCCGGTAGTGGTCGTATTGCTCGTTTATTGAGGACAGTGAAGAACTTAATGGTTCAA 494
Query 361 CAGTCAGTGAAGCCGGAAGAGATTCTGGAAAATAAACTTGTTATTGTACCACTCTTGAAG 420
||| ||||||||| |||||||||||||||||||| ||||||| |||| ||||||||||||
Sbjct 495 CAGCCAGTGAAGCAGGAAGAGATTCTGGAAAATACACTTGTTCTTGTTCCACTCTTGAAG 554
Query 421 GAGAAGGCTGCTGACGTGGTTAATATATTATCTGAGGGACACTGGACTTCTACTTGTGTT 480
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 555 GAGAAGGCGGCTGACGTGGTGAAGATATTATCTGAGGGACACTGGACTTCTACTTGTGTT 614
Query 481 GTCACGCTCAAGAAGTTTCGGAATTTGTGCAACGGCTCGAATGAGGCATCTGCTGTTTTG 540
|||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 615 GTCACGCTGAAGAAGTTTCGGAATTTGTGCAACGGTTCGAATGAGGCTTCAGCTGTTTTG 674
Query 541 AGTCACTTGTCAGGGTGTGGAAAAGCGCATAAAATCTCTATCAATCGGGGAGAACTGATC 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 AGTCACTTGTCAGGGTGTGGAAAAGCGCATAAAATCTCTATCAATCGGGGAGAACTGATT 734
Query 601 GAGGGCATTAAAGTGTCCTTTTCACAAGCAGCACTTCCCAGTATCTCAACTTTAGACTGT 660
||||| |||| ||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 735 GAGGGTGTTAAGGTGTCCTTTTCACAAACAGCACTTCCCGGTATCTCAACTTTAGACTGT 794
Query 661 GATATTCTGCACTTGCTAAGGACTACAGAAAAGCTCCAAGATCAACTTGAAGTGATGGAC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 GATATTCTGCACTTGCTAAGGACTACAGAAAAGCTCCAAGATCAACTTGAAGTGATGGAC 854
Query 721 CAACGTTGTGAAAAGTCAAAGAAATCAGCGCTGGCATCTCTAAAGTCTGGACACAGGAAA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 CAACGTTGTGAAAAGTCAAAGAAATCAGCGCTGGCATCTCTAAAGTCTGGACACAGGAAA 914
Query 781 GTTGCTCTACGGCATGCAAGGGAATTGAAGTTGGCGACTGAGAGCAGAGAAAAATGCACG 840
||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 915 GTTGCTCTAAGGCATGCAAGGGAATTGAAGGTGGTGACTGAGAGCAGAGAAAAATGCACG 974
Query 841 TCACTTCTGAACAGAGTAGAAGAAGTGTTGAACACTATAGCGGATTCTGAATCTACGAAA 900
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 975 TCACTTCTGAACAGAGTAGAAGAAGTGTTGAACACTATAGCGGATTCCGAATCTACGAAA 1034
Query 901 ATGGTCTCAGAAGCAATCAAAACTGGAGCTAGGGTTATGAAGGACATCAAGATCAGTGCA 960
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 ATGGTCTCAGAAGCAATTAAAACTGGAGCTAGGGTTATGAAGGACATCAAGATCAGTGCA 1094
Query 961 GATGATGTTCATGACTATTTAGAAGAACTTGAGGAAACTATTGAATCACAGAAGCAAGTC 1020
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 GATGATGTTCATGACTATCTAGAAGAACTTGAGGAAACTATTGAATCACAGAAGCAAGTC 1154
Query 1021 GAAAAAGCTCTCGAATCAGCTCCATATCCAGATACTGATGATGAAAATATCGAAGACGAA 1080
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||
Sbjct 1155 GAAAAAGCTCTCGAATCAGCTCCATATCCAGATATTGATGATGAAGATATCGAAGAAGAA 1214
Query 1081 TTACTGGAATTAGAGATGGACCTTGAAAGTGAAAGTTCTCAGGTCCTACCAGCGAATTTA 1140
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1215 TTACTGGAACTAGAGATGGACCTTGAAAGTGAAAGTTCTCAGGTCCTACCAGCGACTTCA 1274
Query 1141 GATACTGCAGATTCACTGACTGAGATGTTCTCAGAGCTTAAACTTGGCAAGACGAAACAA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 GATACTGCAGATTCACTGACTGAGATGTTCTCAGAGCTTAAACTTGGCAAGACGAAACAA 1334
Query 1201 ACATTGGA-GC-CA-GCT-C-G-G--A--T--GA--AA-GATAGCGGAAAAAAGATTCTT 1245
|||||||| | || ||| | | | | | || || |||||||||||||||||||||
Sbjct 1335 ACATTGGAAGAGCAAGCTACTGAGCCAGCTCAGATGAAAGATAGCGGAAAAAAGATTCTT 1394
Query 1246 GAAGCAGCATAG 1257
||||||||||||
Sbjct 1395 GAAGCAGCATAG 1406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61796870895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5