BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899237

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G62450.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   411    2e-114


> AT3G62450.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant 
structures; EXPRESSED DURING: 15 growth stages; Has 35 Blast 
hits to 35 proteins in 15 species: Archae - 0; Bacteria - 
0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes 
- 1 (source: NCBI BLink). | chr3:23098144-23098630 
FORWARD LENGTH=225
Length=225

 Score =  411 bits (222),  Expect = 2e-114
 Identities = 224/225 (99%), Gaps = 0/225 (0%)
 Strand=Plus/Plus

Query  1    ATGATGAAGACGAGATTTCTGGATTGGTATTTGAAGATCGCGATTGGATCGGCTATTATC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGATGAAGACGAGATTTCTGGATTGGTATTTGAAGATCGCGATTGGATCGGCTATTATC  60

Query  61   GGCGGAGGCATGGAATTCTTCATGATCAAGACTGGTTTCTACGACAAGGTTACTGTAATA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GGCGGAGGCATGGAATTCTTCATGATCAAGACTGGTTTCTACGACAAGGTTACTGTAATA  120

Query  121  GAAGCAGAGAGACGGGCGTTGGAAAATTCTCCTGAAGCTCAAGCCATGAGAGAAGCTCTT  180
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  121  GAAGCAGAGAGACGGGCGTTGGAAAATTCTCCTGAAGCTCAAGCCATCAGAGAAGCTCTT  180

Query  181  AATCCTTGGAGGAACAAGGACGCAGAAACAAGCAAAACCCCATAA  225
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AATCCTTGGAGGAACAAGGACGCAGAAACAAGCAAAACCCCATAA  225



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10103817549


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5