BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899270

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G62840.1 | Symbols:  | Small nuclear ribonucleoprotein famil...   566    6e-161


> AT3G62840.1 | Symbols:  | Small nuclear ribonucleoprotein family 
protein | chr3:23235490-23236816 REVERSE LENGTH=687
Length=687

 Score =  566 bits (306),  Expect = 6e-161
 Identities = 322/330 (98%), Gaps = 0/330 (0%)
 Strand=Plus/Plus

Query  1    ATGAGTAAACCAATGGAAGAGGATACCACCCAGGGAAAGACTGAGGAGGAGGAGTTCAAC  60
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  121  ATGAGTAAACCAATGGAAGAGGATACCAACCAGGGAAAGACTGAGGAGGAGGAGTTCAAC  180

Query  61   ACTGGACCGCTCTCTGTTCTGATGATGAGTGTTAAGAATAACACTCAGGTGTTGATCAAT  120
            |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  181  ACTGGACCACTCTCTGTTTTGATGATGAGTGTTAAGAATAACACTCAGGTGTTGATCAAT  240

Query  121  TGCCGTAACAACAGGAAACTCCTTGGCCGAGTTAGGGCTTTTGACAGGCACTGCAACATG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TGCCGTAACAACAGGAAACTCCTTGGCCGAGTTAGGGCTTTTGACAGGCACTGCAACATG  300

Query  181  GTTCTTGAGAATGTCAGAGAAATGTGGACTGAGGTACCGAAAACCGGAAAAGGAAAGAAG  240
            |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  301  GTTCTTGAAAATGTCAGAGAAATGTGGACTGAGGTTCCGAAAACCGGAAAAGGAAAGAAG  360

Query  241  AAAGCTCTTCCTGTTAACAGAGATCGATTCATCAGCAAGATGTTTCTGCGGGGAGACTCT  300
            |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| 
Sbjct  361  AAAGCTCTTCCTGTTAACAGAGATCGATTCATCAGCAAGATGTTCCTGCGTGGAGACTCA  420

Query  301  GTCATTATCGTCCTCAGGAACCCCAAGTGA  330
            ||||||||||||||||||||||||||||||
Sbjct  421  GTCATTATCGTCCTCAGGAACCCCAAGTGA  450



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15381931194


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5