BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899271
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62850.1 | Symbols: | zinc finger protein-related | chr3:23... 1565 0.0
> AT3G62850.1 | Symbols: | zinc finger protein-related | chr3:23237487-23239155
REVERSE LENGTH=1419
Length=1419
Score = 1565 bits (847), Expect = 0.0
Identities = 1225/1395 (88%), Gaps = 75/1395 (5%)
Strand=Plus/Plus
Query 1 ATGTATAAGAGGGGAGCGGCGCAGCCTGAGTACGCGACAGCTAAAATAGCGGTGTGGTGG 60
||||||| | |||||||||| ||||||||||||||| |||||||||||| |||||||||
Sbjct 1 ATGTATACGCCGGGAGCGGCGAAGCCTGAGTACGCGAGAGCTAAAATAGCTGTGTGGTGG 60
Query 61 GACATGAAGTG-CTGTCCGATTCCCGAGGGTTATGATGCTCGTCTGGTCCGCCCGAGCAT 119
||||||||| | |||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 61 GACATGAAG-GACTGTCCGATTCCAGAGGGTTATGATGCTCGTCTGGTCCGTCCGAGCAT 119
Query 120 AGAAGCGGCGTTCAATGAACTAGGCTACTCTGGTCCTGTCTCCATCACCGGCTATGGCGA 179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 120 AGAAGCGGCGTTCAATGAACTAGGCTACTCTGGTCCTATCTCCATCACCGGCTATGGTGA 179
Query 180 CCAAAGACAAACCCCTTGTCACATCCTGCGAGGCCTCTCTTCCACCGGAGTCGCTGTTGC 239
||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 180 CCAAAGAGAAACCCCTTGTCAGATCCTGCGAGGGCTCTCTTCCACCGGAGTCGCTGTAGC 239
Query 240 ACAAATCAAATCCGAAAGCACATGCTCACTCATGTATTCGAATATGCTGGAGTGGCGAGA 299
|||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 240 ACAAATCATACCCGAAAGCAGATGCTCACTCATGTATTCGAGTATGCTGGAGTGGCGAGA 299
Query 300 TCATAATCCTCCTCCGGCTACAATGATGCTCATATCCGATCAGTGGCAAG-ATGTCTTCT 358
|| |||||||||||||||||||||||||||| ||||||||||||||| || ||||||||
Sbjct 300 TCTTAATCCTCCTCCGGCTACAATGATGCTCGTATCCGATCAGTGGC-AGCATGTCTTCG 358
Query 359 CTTGGGATCTGGCCCGTCTACAACAGCACACGAAATACAACCTTTTTCTGTCTTATTCAA 418
||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 359 CTTGGGATCTGTCCCGTCTACAACAACACACGAAATACAACCTTTTTCTGGCTTATTCAA 418
Query 419 CTAAGTCTAACATAGGTTCGGCACTGGA-ACCTTGTGGAAAGTGGACCTGGACG-AAGTT 476
|| || || | |||||||||||| || |||||||||| |||||| ||||| | || ||
Sbjct 419 CTGAGCCTTTCGCAGGTTCGGCACT-GAGACCTTGTGGAGAGTGGATCTGGA-GAAATTT 476
Query 477 ACTTGCGACCAAAAGGGAACTTGTTCAGGACCAAAAG-TGCTGCAGTCGTGAGTTATCTG 535
||||| ||||||||||||| |||||||||| ||| | || ||||| ||||| |||||
Sbjct 477 ACTTGAGACCAAAAGGGAATTTGTTCAGGA-CAAGTGCAGCAGCAGTTGTGAGGTATCTC 535
Query 536 CCATGTTTTATTGCAAATCGTGCAGTTACCAAGGCCAAAGCGTGGAGGGTTTCAGGAAGC 595
||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||| ||
Sbjct 536 CCATGTTTTATTGCAAATCTTGCTCTTACCAGGGCCAAAGCGTGGAGGGTTTCAGGAGGC 595
Query 596 ATCTCTCGAGTAGAAAGCATGCAGTGAGAGAGGTTACAAACCGTATACATCCAGAACTTG 655
|| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 596 ATGTCTCGAGTGGAAAGCATGCAGTGAAAGAGGTTACAAACCGTATACATCCAGAACTTG 655
Query 656 ACTATTTGACGAGGACGTGGGCAAAGAACTACCCTGCGAAGCCTGAGTACGCGACAGCTC 715
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 656 ACTATTTGACGAGGACGTGGGCAAAGAACTACACTGCGAAGCCTGAGTACGCGACAGCTC 715
Query 716 AAATAGCGGTGTGGTGGGACATGATGGACTGTCCGATTCCCGAGGGTTATGATGCTCGTC 775
||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 716 CAATAGTGGTGTGGTGGGACATGAAGGACTGTCCGATTCCAGAGGGTTATGATGCTCGTC 775
Query 776 AGGTCCGTCCGAGTATAGAAGCCGCGTTCAAGAAACTAGGCTACTCGGGTCCTGTCTCCA 835
|||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 776 AGGTCCGTCCGAGTTTAGAAGGGGCGTTCAAGAAACTAGGCTACTCTGGTCCTGTCTCCA 835
Query 836 TCACTGCCTATGGCGACCACAACAAAACCCCTGATTACATCCTGCGAGAGCTCTCTTCCA 895
|||| | | ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 836 TCACCGGATGTGGCGACCACAACAAAACCCCTGATCACATCCTGCGAGAGCTCTCTTCCA 895
Query 896 CTGGAGTCGA------A---------G------TCATATACAGTCGCATGTTTAGAAATT 934
|||||||||| | | ||||||||||||||||||||| ||||
Sbjct 896 CTGGAGTCGATCTTGCACATTCCATCGACGAAGTCATATACAGTCGCATGTTTATAAATA 955
Query 935 TGTCGGAGTGGAAAGATAGTAATCCTCCTCCGGCTACAATTATGCTCATATCCGATGCTG 994
|| | ||||||||| | |||||||||||||||||||||| |||||||||||||||| ||
Sbjct 956 TGAAGCAGTGGAAAGCTCGTAATCCTCCTCCGGCTACAATCATGCTCATATCCGATGGTG 1015
Query 995 TGGAGGTGATGTTCTCAGATGCTCTT-GCCCGG-TTACTACAAGAGACGAAATACAACCT 1052
||| | |||||||| | || | | ||| | ||||||||||||||||| ||||||||
Sbjct 1016 TGGTGATGATGTTCGAAAATT-TAATCGCC-GACTTACTACAAGAGACGAAGTACAACCT 1073
Query 1053 TTTTCTGGCTTATTCATATAGGCCTTACAAAATGTCAGTCTTGCTCACTTCTGCAGAGTG 1112
||||||||||||||| || ||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1074 TTTTCTGGCTTATTCGTACAGGCCTTACAAAATGTCTGTCCTGCTCACTTCTGCAGAGTG 1133
Query 1113 GCTTTGGGAAAGCTTACTTCTTGCAGGTGtttttttCTCCTCTCCTTATCATCATC--C- 1169
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1134 GCTTTGGAAAAGCTTACTTGTTGCAGGTGTTTTTTTCTCCTCTCCTTATCATCATCATCC 1193
Query 1170 ACTAA---C---GTTT--GA---A-ACTAATGACGCTA-C------A-AGA-A-GA--C- 1204
||||| | |||| || | | |||| ||||| | | ||| | || |
Sbjct 1194 ACTAATGACTCTGTTTCTGAGCTATA-TAATTACGCTCTCTGTTTCAGAGACAAGAAACC 1252
Query 1205 ACGTTCTTGGCAAGTGCAGT----G--AAAGGGGTGAA---TCTACCAAAATGTTTTCTT 1255
|||||||| ||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct 1253 ACGTTCTTCGCAAGTGCAGTCAAAGTCAAAGGGGTGAACCGTCTACCAAAATGTTTTCTT 1312
Query 1256 GCACAGT-GTGTCTTTGTGATTGCAAAGGCCTTGAAGATTTGAGGACGCACCTCTCAAGT 1314
||| || ||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1313 GCAT-GTTGTGTCTTTGTGATTGCAAAAGCCTTGAAGATTTGAGGACGCATCTCTCAAGT 1371
Query 1315 GAAGACCATGCAGTG 1329
|||||||||||||||
Sbjct 1372 GAAGACCATGCAGTG 1386
Score = 305 bits (165), Expect = 6e-82
Identities = 278/330 (84%), Gaps = 18/330 (5%)
Strand=Plus/Plus
Query 19 GCGCAGCCTGAGTACGCGACAGCTAAAATAGCGGTGTGGTGGGACATGAAGTG-CTGTCC 77
||| |||||||||||||||||||| ||||| ||||||||||||||||||| | ||||||
Sbjct 691 GCGAAGCCTGAGTACGCGACAGCTCCAATAGTGGTGTGGTGGGACATGAAG-GACTGTCC 749
Query 78 GATTCCCGAGGGTTATGATGCTCGTCTGGTCCGCCCGAGCATAGAAGCGGCGTTCAATG- 136
|||||| ||||||||||||||||||| |||||| ||||| |||||| ||||||||| |
Sbjct 750 GATTCCAGAGGGTTATGATGCTCGTCAGGTCCGTCCGAGTTTAGAAGGGGCGTTCAA-GA 808
Query 137 AACTAGGCTACTCTGGTCCTGTCTCCATCACCGGCTATGGCGACCAAAGACAAA-CCCCT 195
|||||||||||||||||||||||||||||||||| | ||||||||| | ||||| |||||
Sbjct 809 AACTAGGCTACTCTGGTCCTGTCTCCATCACCGGATGTGGCGACCACA-ACAAAACCCCT 867
Query 196 TG-TCACATCCTGCGAG-GCCTCTCTTCCACCGGAGTCGCTGTTGCACAAATCAAATC-- 251
| |||||||||||||| || |||||||||| ||||||| | ||||||| || | ||
Sbjct 868 -GATCACATCCTGCGAGAGC-TCTCTTCCACTGGAGTCGATCTTGCACAT-TCCA-TCGA 923
Query 252 CGAAAG-CACATGCTCACTCATGTATTCGAA-TATGCTGGAGTGGCGAGATCATAATCCT 309
|||| | || || | | ||||| || || |||| | ||||| || || |||||||
Sbjct 924 CGAA-GTCATATACAGTCGCATGT-TTATAAATATGAAGCAGTGGAAAGCTCGTAATCCT 981
Query 310 CCTCCGGCTACAATGATGCTCATATCCGAT 339
|||||||||||||| |||||||||||||||
Sbjct 982 CCTCCGGCTACAATCATGCTCATATCCGAT 1011
Score = 268 bits (145), Expect = 8e-71
Identities = 328/409 (80%), Gaps = 41/409 (10%)
Strand=Plus/Plus
Query 691 GCGAAGCCTGAGTACGCGACAGCTCAAATAGCGGTGTGGTGGGACATGATGGACTGTCCG 750
||||||||||||||||||| |||| ||||||| |||||||||||||||| ||||||||||
Sbjct 19 GCGAAGCCTGAGTACGCGAGAGCTAAAATAGCTGTGTGGTGGGACATGAAGGACTGTCCG 78
Query 751 ATTCCCGAGGGTTATGATGCTCGTCAGGTCCGTCCGAGTATAGAAGCCGCGTTCAA-GAA 809
||||| ||||||||||||||||||| |||||||||||| |||||||| |||||||| | |
Sbjct 79 ATTCCAGAGGGTTATGATGCTCGTCTGGTCCGTCCGAGCATAGAAGCGGCGTTCAATG-A 137
Query 810 ACTAGGCTACTCGGGTCCTGTCTCCATCACTGCCTATGGCGACCACAACA-AAACCCC-T 867
|||||||||||| |||||| |||||||||| | |||||| ||||| || | ||||||| |
Sbjct 138 ACTAGGCTACTCTGGTCCTATCTCCATCACCGGCTATGGTGACCA-AAGAGAAACCCCTT 196
Query 868 GATTACATCCTGCGAGAGCTCTCTTCCACTGGAGT--C----G---AAGTCAT-----AT 913
| | | |||||||||| |||||||||||| ||||| | | || |||| |
Sbjct 197 G-TCAGATCCTGCGAGGGCTCTCTTCCACCGGAGTCGCTGTAGCACAAATCATACCCGAA 255
Query 914 A-C--A-G-T--CGCATGT-TTAGAAATTTGTC-GGAGTGGAAAGATAGTAATCCTCCTC 964
| | | | | | ||||| || | | | || | ||||||| |||| |||||||||||
Sbjct 256 AGCAGATGCTCACTCATGTATTCG-AGTATG-CTGGAGTGGCGAGATCTTAATCCTCCTC 313
Query 965 CGGCTACAATTATGCTCATATCCGATGCTGTGG-AG-GTGATGTTCTC-AGATGCTCTTG 1021
|||||||||| |||||| |||||||| | |||| || || | ||| | | | || ||
Sbjct 314 CGGCTACAATGATGCTCGTATCCGAT-CAGTGGCAGCATG-TCTTCGCTTG-GGATC-TG 369
Query 1022 -CCCGGT-TACTACAAGAGACGAAATACAACCTTTTTCTGGCTTATTCA 1068
||| || ||| |||| | ||||||||||||||||||||||||||||||
Sbjct 370 TCCC-GTCTACAACAACACACGAAATACAACCTTTTTCTGGCTTATTCA 417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71736578805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5