BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899275
Length=1719
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62890.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2606 0.0
> AT3G62890.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:23246157-23248063 FORWARD LENGTH=1823
Length=1823
Score = 2606 bits (1411), Expect = 0.0
Identities = 1623/1726 (94%), Gaps = 11/1726 (1%)
Strand=Plus/Plus
Query 1 ATGAGCAA---GGAGGCAATTATATCTTATGCAAATCCGATTTTTCATATTCGGCATCTA 57
|||||||| || |||||| ||| ||||||||||||| || ||||||||||| ||||||
Sbjct 12 ATGAGCAAGGGGGCGGCAATAATAGCTTATGCAAATCCCATCTTTCATATTCGACATCTA 71
Query 58 AAGCTTGAATCTTTCGTATGGAACATCATCATTCGTGCCATTGTTCACAATGTTTCGCCG 117
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 72 AAGCTTGAATCTTTCTTGTGGAACATCATCATTCGTGCCATTGTTCACAATGTTTCGTCG 131
Query 118 CCTCAACGACATTCTCCGATCTCAGTCTACTTCCGTATGCGCCACCATTTCGTCAGTCCC 177
|||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||||
Sbjct 132 CCTCAACGACATTCTCCGATCTCAGTCTACCTCCGTATGCGCAACCATCGCGTCTCTCCC 191
Query 178 GATTTTCATACTTTTCCGTTTCTTCTCCCTTCTTTCCACAATCCAATCCATCTTCCTCTT 237
||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 192 GATTTTCATACCTTTCCGTTTCTTCTCCCTTCTTTCCACAATCCGCTTCATCTTCCTCTT 251
Query 238 GGACAACGAACTCATGCTCAGATTCTTCTTTTTGGACTTGACAAAGACCCATTTGTCCGG 297
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 GGGCAACGAACTCATGCTCAGATTCTTCTTTTTGGACTTGACAAAGACCCATTTGTCCGA 311
Query 298 ACTTCTCTGCTCAATATGTATTCTTCTTGTGGCGACTTAAGCTCAGCTCTGCGTA-TTTT 356
||||| |||||||| ||||||||||| ||||||||||| || ||||||| ||| | ||||
Sbjct 312 ACTTCACTGCTCAACATGTATTCTTCCTGTGGCGACTTGAGATCAGCTCAGCG-AGTTTT 370
Query 357 CGACGAGTCAGTCTCAAAGGATTTGCCGGCGTGGAACTCGGTGGTCAATGCTTATGCTAA 416
||| || || | ||| |||||||| ||||| |||||||| ||||||||||||||||| ||
Sbjct 371 CGATGACTCGGGCTCGAAGGATTTACCGGCCTGGAACTCTGTGGTCAATGCTTATGCCAA 430
Query 417 AGCCGGGTTGATCAATCATGCGCGGAAACTGTTCGACGAAATGCCCGAAAGAAACGTGAT 476
||| ||||||||| || |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 431 AGCTGGGTTGATCGATGATGCGCGGAAACTGTTCGACGAAATGCCTGAAAGAAACGTGAT 490
Query 477 TTCCTGGAGCTGCTTGATAAACGGGTACGTTATGTGTGGGAAATACAAAGAAGCGCTTGA 536
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 491 TTCCTGGAGCTGCTTGATTAACGGCTACGTTATGTGTGGGAAATACAAAGAAGCGCTTGA 550
Query 537 TTTGTTCAGAGAGATGCAATTACCTAAATCAAATGAAGCTTTCGTCAGCCCCAACAAGTT 596
||||||| | |||||||||||||||||| |||| ||||| |||||||| |||||| ||||
Sbjct 551 TTTGTTCCGGGAGATGCAATTACCTAAACCAAACGAAGCATTCGTCAGACCCAACGAGTT 610
Query 597 TACAATGTCGACTGTGCTCTCGGCTTGTGGGCGATTGGGTGCGCTCGAGCAAGGGAAATG 656
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 TACAATGTCGACTGTACTCTCGGCTTGTGGGCGATTGGGTGCGCTCGAGCAAGGGAAATG 670
Query 657 GGTTCACTCTTACATCGATAAGTACGGA-G-TGAAGATTGACATTGTTTTAGGCACAGCT 714
||||||| ||||||||||||||||| | | || ||||||||||||| ||||||||||||
Sbjct 671 GGTTCACGCTTACATCGATAAGTAC-CACGTTG-AGATTGACATTGTCTTAGGCACAGCT 728
Query 715 CTCATTGATATGTACGCCAAATGTGGGAAACTAGAGAGAGCAAAAAGGGTTTTCAATGCC 774
|||||||||||||||||||||||||||| || ||||| || ||||||||||||||||||
Sbjct 729 CTCATTGATATGTACGCCAAATGTGGGAGCCTCGAGAGGGCGAAAAGGGTTTTCAATGCC 788
Query 775 TTGGGATCCAAGAAAGACGTCAAAGCGTACAGTGCTATGATCTCTTGCTTAGCAATGTAC 834
||||||||||||||||| |||||||| |||||||||||||| | ||||||||||||||||
Sbjct 789 TTGGGATCCAAGAAAGATGTCAAAGCTTACAGTGCTATGATATGTTGCTTAGCAATGTAC 848
Query 835 GGTCTCACAGATGAGTGCTTCCAACTGTTCTCTGAGATGACCACGAGTAACAACATAAAC 894
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 849 GGTCTCACAGATGAGTGCTTCCAACTGTTCTCTGAGATGACCACGAGTGACAACATAAAC 908
Query 895 CCAAACTCAGTGACATTCGTGGGCATTCTTGGTGCTTGTGTACATCGAGGTCTAATAAAT 954
|||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 909 CCAAACTCTGTGACATTTGTGGGCATTCTCGGTGCTTGTGTACATCGAGGTCTAATAAAC 968
Query 955 GAAGGAAAATCTTACTTTAAAATGATGACTGAGGAATTCGGTATCACTCCATCAATCCAG 1014
|||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||
Sbjct 969 GAAGGAAAATCTTACTTTAAAATGATGATTGAGGAATTTGGTATCACGCCATCAATCCAG 1028
Query 1015 CATTATGGTTGCATGGTTGATCTCTATGGAAGATCTGGTTTGATCAAAGAAGCAGAGAGC 1074
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1029 CATTATGGTTGTATGGTTGATCTCTACGGAAGATCTGGTTTGATCAAAGAAGCAGAGAGC 1088
Query 1075 TTTATAGCATCTATGCCTATGGAACCTGATGTACTTATTTGGGGGTCTCTCTTAAGTGGA 1134
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1089 TTTATAGCATCTATGCCTATGGAGCCTGATGTACTTATTTGGGGGTCTCTCTTAAGCGGA 1148
Query 1135 TCAAGAATGCTTGGGGATATCAAGACTTGTGAAGGTGCCCTCAAGCGACTCATAGAGCTA 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1149 TCAAGAATGCTTGGGGATATCAAGACTTGTGAAGGTGCCCTCAAGCGACTCATCGAGCTA 1208
Query 1195 GATCCTATGAACAGTGGAGCCTATGTGCTTCTCTCTAACGTCTATGCCAAAACAGGGAGG 1254
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1209 GATCCTATGAACAGTGGAGCATATGTGCTTCTCTCTAACGTCTATGCCAAAACAGGGAGG 1268
Query 1255 TGGATAGAAGTTAAGCGTATCAGACACGAAATGGAGGTCAAA-GGCATTAAGAAAGTTCC 1313
||||| ||||| ||| |||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct 1269 TGGATGGAAGTCAAGTGTATCAGACACGAAATGGAGGT-AAAGGGCATTAATAAAGTTCC 1327
Query 1314 GGGATGTAGCTATGTTGAAGTAGAGGGAGTGGTTCACGAGTTTGTTGCAGGAGACGAATC 1373
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1328 GGGATGTAGCTATGTTGAAGTAGAGGGAGTGGTTCACGAGTTTGTTGTAGGAGACGAATC 1387
Query 1374 TCAACAAGAGAGCGAAAAGATTTACGCTATGCTCGATGAGATAATGCAGAGGCTGAGAGA 1433
||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 1388 TCAACAAGAGAGCGAAAGGATCTATGCTATGCTCGATGAGATAATGCAGAGGCTGAGAGA 1447
Query 1434 AGCTGGATATGTTTCAGACACTAAGGAGGTTTTACTTGATCTTGACGAGAAAGATAAAGA 1493
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1448 AGCTGGATATGTTACAGACACTAAGGAGGTTTTACTTGATCTTAACGAGAAAGATAAAGA 1507
Query 1494 GATGGCTTTGTCTTACCACAGTGAGAAACTGGCGATTGCGTTCTGTTTGATGAAGACAAG 1553
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1508 GATAGCTTTGTCTTACCACAGTGAGAAACTGGCTATTGCGTTCTGTTTGATGAAGACAAG 1567
Query 1554 GCCTGTAACTCCAGTGAGAATCATCAAGAACCTCAGAATATGTGGAGATTGTCATCTTGT 1613
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1568 GCCTGGAACTCCAGTGAGAATCATCAAGAACCTCAGAATCTGTGGAGATTGTCATCTTGT 1627
Query 1614 GATGAAGATGATCTCGAAGCTTTTTAGTAGAGAAATTGTTGTGAGAGATTGTAATAGATT 1673
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1628 AATGAAGATGATCTCGAAGCTTTTTAGTAGAGAAATTGTTGTGAGAGATTGTAATAGATT 1687
Query 1674 TCACCATTTTAGTGACGGGTCTTGCTCTTGCAGAGATTTTTGGTGA 1719
|||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1688 TCACCATTTTAGAGACGGGTCTTGCTCTTGCAGAGATTTTTGGTGA 1733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84989522685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5