BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899328
Length=1569
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63340.2 | Symbols: | Protein phosphatase 2C family protein... 1238 0.0
AT3G63320.1 | Symbols: | Protein phosphatase 2C family protein... 953 0.0
> AT3G63340.2 | Symbols: | Protein phosphatase 2C family protein
| chr3:23391628-23398377 REVERSE LENGTH=3953
Length=3953
Score = 1238 bits (670), Expect = 0.0
Identities = 752/791 (95%), Gaps = 7/791 (1%)
Strand=Plus/Plus
Query 786 TACTTTGGTGAAGTTGTACAGAGAGCGAAGGCGCAATCGAGGCTCTTCACCATCAAGGTT 845
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1290 TACTTTGGTGAAGTTGTACAGAGAGCGAAGACGCAATCGGGGCTCTTCACCATCAAGGTT 1349
Query 846 CTCTGACTTTAAACTGGAACATGGCAATGGACTACTGCATTTCATTGCCAAAGAATTGAC 905
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1350 CTCTGACTTTAAACTGGAACATGGCAATGGACTACTGCGTTTCATTGCCAAAGAATTGAC 1409
Query 906 AAAGGACCATCACCCAAATAGGGAGGATGAAAAGATTCGTGTTGAAGCTGCAGGAGGTTA 965
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1410 AAAGGACCATCACCCAAATAGAGAGGATGAAAAGATTCGTGTTGAAGCTGCAGGAGGTTA 1469
Query 966 TGTCACAGAGTGGGCCGGTGTGCCACGAGTGAATGGCCAGCTGACTGTCTCCCGTTCAAT 1025
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1470 TGTCACTGAGTGGGCCGGTGTGCCACGAGTGAATGGCCAGCTGACTGTCTCCCGTGCAAT 1529
Query 1026 TGGTGACCTTACTTATAAAAGTTACGGTGTCATCTCTGCACCTGAGGTGATGGACTGGCA 1085
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1530 TGGTGACCTTACTTATAGAAGTTATGGTGTCATCTCTGCACCTGAGGTGATGGACTGGCA 1589
Query 1086 GCCTCTACTGGCTAATGACAGCTACTTGGTAGTATCATCGGATGGCATCTTTGAGAAGTT 1145
||||||| ||||||||||||||| | ||||||| ||||| ||||||||||||||||||||
Sbjct 1590 GCCTCTAGTGGCTAATGACAGCTTCCTGGTAGTGTCATCTGATGGCATCTTTGAGAAGTT 1649
Query 1146 GGAGGTGCAAGAAGTATGTGATCGTCTGTGGGAAGTAAACAATCAAACTAGCTCTGGAGC 1205
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1650 GGAGGTGCAAGAAGTATGTGATCTTTTGTGGGAAGTAAACAATCAAACTAGCTCTGGAGC 1709
Query 1206 AGGAGTGCCTTCATACTGCTCAATTTCTTTGGCAGACTGCTTGGTTAATACTGCCTTTGA 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1710 AGGAGTGCCTTCATACTGCTCAATTTCTTTGGCAGACTGCTTGGTTAATACTGCCTTTGA 1769
Query 1266 GAAGGGAAGTATGGATAATATGGCTGCTGTTGTTGTTCCTCTAAAATCGAATCTAGTTAC 1325
||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1770 GAAGGGAAGCATGGACAATATGGCTGCTGTTGTTGTCCCTCTAAAATCGAATCTAGTTAC 1829
Query 1326 GCAGCTCCAATGGAAAGAGCAGAGCATGAATGACAACAAAGATAAGATTGCTTCAGCACT 1385
||||||||| |||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1830 TCAGCTCCAACGGAAGGAGCAGAGTATGAATGACAACAAAGACAAGATTGCTTCAGCACT 1889
Query 1386 ACCCACTAACAACTGTGCGCTTCCAT---TGCCTAATGATATAAATTTGGGTCCATTGCA 1442
|||| || ||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1890 ACCCTGTAGCAACTGTACGCTTCCACCAGTGCCTAATGATATAAATTTGGGTCCATTGCA 1949
Query 1443 ATTGAAACAGGCTCAACCACTTGCAACCATGTTTAACAGGTTATTG--A-AG-TTAAAAA 1498
||||||||||||||| ||||||| |||||||||||||||||||||| | || |||||||
Sbjct 1950 ATTGAAACAGGCTCAGCCACTTGGAACCATGTTTAACAGGTTATTGGTAGAGGTTAAAAA 2009
Query 1499 CGGAAGTTTTTGCCGCTTTTATATGTCAGAGAACCTTATTGGGGCGTCTCAAGGGCAAAT 1558
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2010 CGGAAGTTTTTGCCGCTTTTATATGTCAGAGAACCTTATTGGGGCATCTCAAGGGCAAAT 2069
Query 1559 GGACAATTTGA 1569
| |||||||||
Sbjct 2070 GAACAATTTGA 2080
Score = 1112 bits (602), Expect = 0.0
Identities = 721/777 (93%), Gaps = 14/777 (2%)
Strand=Plus/Plus
Query 23 GGCTCCTTATTACATCTTTCGTCCTCTTCTTATTGGCGATTAACTGTCTAGGGGAATCTT 82
|||||||||||| || ||||||| ||||||| ||| ||||||||||| |||||||||||
Sbjct 416 GGCTCCTTATTATATTTTTCGTCTTCTTCTTCCTGGTGATTAACTGTCGAGGGGAATCTT 475
Query 83 CGACGTGTTTGGCCGTTTACAAACAAGGCGGAGCTCCAGCCGTGTTTCAATCACCCAAAT 142
| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 476 CTACGTGTTTGGCGGTTTACAAACAAGGCGGAGCTCCAGCTGTGTTTCAATCACCCAAAT 535
Query 143 GCCCTCGTTGGAATCTCCACAATTGGGG---T-C-A---A-AGTGGAGCTGGTCGTTGCC 193
|||||||||||| |||||| |||||||| | | | | |||||||||||||||||||
Sbjct 536 GCCCTCGTTGGATTCTCCAGAATTGGGGTTCTCCTACTCATAGTGGAGCTGGTCGTTGCC 595
Query 194 ATACTGCAGCTATT-AGAGGTCGGAGGAACTACCAAGAGGATCGTCTCCTCTGTGCTCTT 252
|||| ||||||||| | |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 596 ATACCGCAGCTATTCA-AGGTCGGAGGAACTACCAAGAGGATCGTCTTCTCTGTGCTCTT 654
Query 253 GATCTTCGCATTCCGTTTCCCGGCAAGACTGG-A-A-CAAAGGATGTTTTGGTTGGAATT 309
|||||||||||||| ||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 655 GATCTTCGCATTCCATTTCCCGGCAAGACTGGAACACCAAAGGATGTTTTGGTTGGAATT 714
Query 310 GCAGCAGTCTTTGATGGACATAATGGTGCAGAAGCCAGTGAAATGGCTTCAAAACTTTTA 369
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 715 GCAGCAGTCTTTGACGGACATAATGGTGCAGAAGCCAGTGACATGGCTTCAAAACTTTTA 774
Query 370 TTGGATTACTTTGCTTTGCATATCAACTTTCTCTTGGACGCAACTTTTTCTGCTATGACG 429
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 775 TTGGATTACTTTGCTTTGCATATCAACTTTCTCTTGGACGCTACATTTTCTGCTATGACG 834
Query 430 AGGAAGATGATTGGACGACTACCAACTAAAGGGGAGCACCGTGTTATTTTGCATGGCGTA 489
|||||| ||||||||||| | ||||||||||| || ||| |||| |||||||| ||||||
Sbjct 835 AGGAAGTTGATTGGACGATTCCCAACTAAAGGAGACCACAGTGTCATTTTGCACGGCGTA 894
Query 490 AGTCAGGATGAAATCAGGCATCTATACAACCTGGATTTTCAAATGCAGTTTCGAGACTCA 549
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 AGTCGGGATGAAATCATGCATCTATACAACCTGGATTTTCAAATGCAGTTTCGAGACTCA 954
Query 550 TTGCCACTTAATTTTGATGATTCTCTTCACTTGGATATTATGAAGGAAGCATTGCTGAGA 609
||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 955 TTGCCACTTCATTTTGATGATTCTCTCCCCTTGGATATTATGAAGGAAGCATTGCTGAGA 1014
Query 610 GCAATCCATGACATTGATGCCACATTTACTAAGGAAGCATCAACCCGAAAGCTTAATTCA 669
|| |||||||||||||||| ||||||||||||||||||||||| | ||||||| ||||||
Sbjct 1015 GCGATCCATGACATTGATGTCACATTTACTAAGGAAGCATCAAACAGAAAGCTGAATTCA 1074
Query 670 GGTTCAACGGCTACAATTGCACTTATAGCTGATGGTCAACTAATGGTTGCTAGTATCGGT 729
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1075 GGTTCAACGGCTACAATTGCACTTATTGCAGATGGTCAACTAATGGTTGCTAGTATCGGT 1134
Query 730 GACTCAAAGGCACTTCTGTGTTCTGAAAAATTTGAGACTCTCGAAGAAGCTAGAGGT 786
|||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1135 GACTCAAAAGCACTTCTCTGTTCTGAAAAATTTGAGACTCTGGAAGAAGCTAGAGGT 1191
> AT3G63320.1 | Symbols: | Protein phosphatase 2C family protein
| chr3:23389838-23391556 REVERSE LENGTH=1272
Length=1272
Score = 953 bits (516), Expect = 0.0
Identities = 677/754 (90%), Gaps = 14/754 (2%)
Strand=Plus/Plus
Query 575 TTCACTTGGATATTATGAAGGAAGCATTGCTGAGAGCAATCCATGACATTGATGCCACAT 634
|||||||||||||| |||| ||||| ||||| ||||| ||| | ||||||||||| ||||
Sbjct 407 TTCACTTGGATATTCTGAAAGAAGCCTTGCTCAGAGCTATCTACGACATTGATGCAACAT 466
Query 635 TTACTAAGGAAGCATCAACCCGAAAGCTT-AATTCAGGTTCAACGGCTACAATTGCACTT 693
|||||||||||||||| || |||||| || |||||||||||||||| ||||||||||||
Sbjct 467 TTACTAAGGAAGCATCTACTCGAAAG-TTGGATTCAGGTTCAACGGCCACAATTGCACTT 525
Query 694 ATAGCTGATGGTCAACTAATGGTTGCTAGTATCGGTGACTCAAAGGCACTTCTGTGTTCT 753
|| || |||||||||||| |||||||||| |||||||| || ||||||||| ||||||||
Sbjct 526 ATCGCAGATGGTCAACTACTGGTTGCTAGCATCGGTGATTCTAAGGCACTTTTGTGTTCT 585
Query 754 GAAAAATTTGAGACT-CTCGAAGAAGCTAGAGGTACTTTGGTGAAGTTGTACAGAGAGCG 812
|||| || ||||||| || ||||| |||| || |||||| | |||||||||||||||||
Sbjct 586 GAAAGATATGAGACTCCT-GAAGAGGCTAAAGCTACTTTAATAAAGTTGTACAGAGAGCG 644
Query 813 -AAGGCGCAATCGAGGCTCTTCACCATCAAGGTTCTCTGACTTTAAA-CTGGAACATGGC 870
|| |||||||| || |||||| ||||||||||||||||| |||||| ||||||||| ||
Sbjct 645 TAA-GCGCAATCAAGACTCTTCCCCATCAAGGTTCTCTGA-TTTAAAGCTGGAACATCGC 702
Query 871 AATGGACTAC-TGCATTTCATTGCCAAAGAATTGACAAAGGACCATCACCCAAATAGGGA 929
| |||||| | ||| ||| ||||||||||||||||||||||||||||||||| |||| ||
Sbjct 703 ACTGGACT-CATGCGTTTTATTGCCAAAGAATTGACAAAGGACCATCACCCAGATAGAGA 761
Query 930 GGATGAAAAGATTCGTGTTG-AAGCTGCAGGAGGTTATGTCA-CAGAGTGGGCCGGTGTG 987
|||||||| | | || | || ||||||||||||||||||||| || ||||||||||||||
Sbjct 762 GGATGAAATGCTCCGAG-TGAAAGCTGCAGGAGGTTATGTCACCA-AGTGGGCCGGTGTG 819
Query 988 CCACGAGTGAATGGCCAGCTGACTGTCTCCCGTTCAATTGGTGACCTTACTTATAAAAGT 1047
||| | |||||||| |||||| ||||||||||||| ||||||||||||||||||| ||||
Sbjct 820 CCAAGGGTGAATGGTCAGCTGGCTGTCTCCCGTTCGATTGGTGACCTTACTTATAGAAGT 879
Query 1048 TACGGTGTCATCTCTGCACCTGAGGTGATGGACTGGCAGCCTCTACTGGCTAATGACAGC 1107
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 880 TACGGTGTCATCTCTGCACCTGAGGTGATGGACTGGCAGCCTCTAGTGGCTAATGACAGC 939
Query 1108 TACTTGGTAGTATCATCGGATGGCATCTTTGAGAAGTTGGAGGTGCAAGAAGTATGTGAT 1167
||||||||||| ||||| ||||| |||||||||||||| ||||||||||| | ||| |||
Sbjct 940 TACTTGGTAGTGTCATCTGATGGTATCTTTGAGAAGTTAGAGGTGCAAGATGCATGCGAT 999
Query 1168 CGTCTGTGGGAAGTAAACAATCAAACTAGCTCTGGAGCAGGAGTGCCTTCATACTGCTCA 1227
|| |||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1000 CGCCTGTGGGAAGTAAAGAATCAAACTAGCTTTGGAGCAGGAGTGCCTTCATATTGCTCA 1059
Query 1228 ATTTCTTTGGCAGACTGCTTGGTTAATACTGCCTTTGAGAAGGGAAGTATGGATAATATG 1287
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 ATATCTTTGGCAGACTGCTTGGTTAATACTGCCTTTGAGAAGGGAAGTATGGATAATATG 1119
Query 1288 GCTGCTGTTGTTGTTCCTCTAAAATCGAATCTAG 1321
||||| || || |||||||||||||| |||||||
Sbjct 1120 GCTGCAGTCGTGGTTCCTCTAAAATCCAATCTAG 1153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77459440935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5