BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899338
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63440.1 | Symbols: ATCKX6, CKX6, ATCKX7 | cytokinin oxidase... 2462 0.0
AT3G63445.1 | Symbols: | other RNA | chr3:23422778-23426362 RE... 364 1e-99
> AT3G63440.1 | Symbols: ATCKX6, CKX6, ATCKX7 | cytokinin oxidase/dehydrogenase
6 | chr3:23424157-23426536 FORWARD LENGTH=2007
Length=2007
Score = 2462 bits (1333), Expect = 0.0
Identities = 1502/1584 (95%), Gaps = 9/1584 (1%)
Strand=Plus/Plus
Query 10 CTCCTCAGGAAAAGAACCATGCTTATAGTAAGAAGCTTCACCATCTTGCTTCTCAGCTGC 69
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 156 CTCCTCAGGAAAAGAACCATGCTTATAGTAAGAAGTTTCACCATCTTGCTTCTCAGCTGC 215
Query 70 ATAGCCTTTAAGCTGGCTTGCTGCTTCTCTAGCAGCATTTCTTCTTTGAAGGCGCTTCCC 129
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 ATAGCCTTTAAGTTGGCTTGCTGCTTCTCTAGCAGCATTTCTTCTTTGAAGGCGCTTCCC 275
Query 130 CTAGTTGGCCACTTGGAGTTTGAAGATGTCCATCACGCCTCCAAAGATTTTGGGAATCGA 189
||||| ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 276 CTAGTAGGCCATTTGGAGTTTGAACATGTCCATCACGCCTCCAAAGATTTTGGAAATCGA 335
Query 190 TACCAGTTGATTCCTTTGGCGGTCTTACATCCCAAATCGGTAAGCGACATCGCCTCAGCG 249
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 336 TACCAGTTGATCCCTTTGGCGGTCTTACATCCCAAATCGGTAAGCGACATCGCCTCAACG 395
Query 250 ATACGACACATCTGGATGATGGGCCCTCATTCACAGCTTACGGTGGCAGCGAGAGGTCGT 309
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 396 ATACGACACATCTGGATGATGGGCACTCATTCACAGCTTACAGTGGCAGCGAGAGGTCGT 455
Query 310 GGACATTCACTCCAAGGCCAAGCACAGACAAGACATGGAGTTGTTATACACATGGAATCA 369
||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||
Sbjct 456 GGACATTCACTCCAAGGCCAAGCTCAAACAAGACATGGAATTGTTATACACATGGAATCA 515
Query 370 CTCCATCCCCAGAAGCTGCAAGTCTACAGTGTGGATGCTCCTGCTCCATACGTTGATGTG 429
|||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||
Sbjct 516 CTCCATCCCCAGAAGCTGCAGGTCTACAGTGTGGATTCCCCTGCTCCATATGTTGATGTG 575
Query 430 TCTGGTGGTGAGCTGTGGATAAACATTTTGCATGAGACCCTCAAGTACGGGCTTGCACCA 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 TCTGGTGGTGAGCTGTGGATAAACATTTTGCATGAGACCCTCAAGTACGGGCTTGCACCA 635
Query 490 AAATCATGGACGGATTACCTACATTTAACTGTAGGTGGTACTCTGTCCAATGCTGGAATC 549
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 636 AAATCATGGACGGATTACCTGCATTTAACTGTAGGTGGTACTCTGTCCAATGCTGGAATA 695
Query 550 AGCGGCCAGGCATTCCGACATGGACCACAAATCAGCAATGTTCATCAACTGGAGATTGTC 609
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 696 AGCGGCCAGGCATTCCGACATGGACCACAGATCAGCAATGTTCATCAACTGGAGATTGTC 755
Query 610 ACAGGAAAAGGCGAGATCCTAAACTGTTCAAAGAGGCAGAACAGCGACTTGTTTGATGGT 669
||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||
Sbjct 756 ACAGGAAAAGGCGAGATCCTAAACTGTACAAAGAGGCAGAACAGCGACTTATTTAATGGT 815
Query 670 GTTCTTGGTGGTTTAGGTCAGTTTGGCATCATAACGCGGGCAAGAATAGCATTGGAACCA 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 GTTCTTGGTGGTTTAGGTCAGTTTGGCATCATAACGCGGGCAAGAATAGCATTGGAACCA 875
Query 730 GCACCAACCATGGTAAAATGGATAAGAGTGTTGTACCTGGATTTTTCAGCTTTTGCCAAG 789
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 876 GCACCAACCATGGTAAAATGGATAAGAGTGTTATACCTGGATTTTGCAGCTTTTGCCAAG 935
Query 790 GACCAAGAGCAACTAATATCTGC--AGATA-ACAAATTCGATTACATAGAAGGGTTTGTG 846
||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 936 GACCAAGAGCAACTAATATCTGCCCAGGGCCACAAATTCGATTACATAGAAGGGTTTGTG 995
Query 847 ATAATAAACAGGACAGGCCTCCTGAACAACTGGAGGTTATCCTTCACCCCGGAAGAGCCT 906
|||||||||||||||||||||||||||| ||||||||| || |||||| | |||||||||
Sbjct 996 ATAATAAACAGGACAGGCCTCCTGAACAGCTGGAGGTTGTCTTTCACCGCAGAAGAGCCT 1055
Query 907 TTAGAAGCAAGCCAATTCAAATCTGATGGAAGGACCCTGTATTGTCTGGAGCTAGCCAAG 966
|||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||
Sbjct 1056 TTAGAAGCAAGCCAATTCAAGTTTGATGGAAGGACTCTGTATTGTCTGGAGCTAGCCAAG 1115
Query 967 TACTTGAAGCAAGATAACAAAGATGTAATCAACCAGGAAGTGAAAGAAACGTTATCAGAA 1026
|| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1116 TATTTGAAGCAAGATAACAAAGACGTAATCAACCAGGAAGTGAAAGAAACATTATCAGAG 1175
Query 1027 CTAAGCTACGTGTCGTCGACACTGTTTTCAACGGAGGTAACATATGAAGCATTCTTGGAC 1086
|||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1176 CTAAGCTACGTGACGTCGACACTGTTTACAACGGAGGTAGCATATGAAGCATTCTTGGAC 1235
Query 1087 AGGGTACATGTGTCTGAGGTAAAACTTCGATCGAAAGGGCAATGGGAGGTGCCACATCCA 1146
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1236 AGGGTACATGTGTCTGAGGTAAAACTCCGATCGAAAGGGCAGTGGGAGGTGCCACATCCA 1295
Query 1147 TGGCTGAACCTGCTGGTACCAAGAAGCACAATCAAAGAATTTGCAAAAGGTGTATTCGGA 1206
||||||||||| |||||||||||||||| |||||| |||||||||| ||||||||| |||
Sbjct 1296 TGGCTGAACCTCCTGGTACCAAGAAGCAAAATCAATGAATTTGCAAGAGGTGTATTTGGA 1355
Query 1207 AACATACTAACGGATACAAGCAACGGCCCAGTCATCGTATACCCAGTGAACAAATCAAAG 1266
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1356 AACATACTAACGGATACAAGCAACGGCCCAGTCATCGTCTACCCAGTGAACAAATCAAAG 1415
Query 1267 TGGGACAACCAAACATCAGCAGTAACACCGGAGGAAGAGGTATTCTATTTGGTGGCCATC 1326
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1416 TGGGACAATCAAACATCAGCAGTAACACCGGAGGAAGAGGTATTCTACCTGGTGGCGATC 1475
Query 1327 CTGACGTCGGCAGTC-CCAGGGAAGG-AGGATGGAGGA-GGAGTAGAACAGATATTGAAG 1383
|| || |||||| || |||||| || |||| |||| ||||||||| |||| |||| |
Sbjct 1476 CTAACATCGGCA-TCTCCAGGGTCGGCAGGAA--AGGATGGAGTAGAAGAGATCTTGAGG 1532
Query 1384 CGGAACAGAAGAATACTGGAATTCAGTGAAGAAGCAGGGATAGGGTTGAAGCAGTATCTG 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1533 CGGAACAGAAGAATACTGGAATTCAGTGAAGAAGCAGGGATAGGGTTGAAGCAGTATCTG 1592
Query 1444 CCACATTACACAACCAGAGAAGAGTGGAGATCCCATTTCGGGGCCAAGTGGGGAGAATTC 1503
||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1593 CCACATTACACGACAAGAGAAGAGTGGAGATCCCATTTCGGGGACAAGTGGGGAGAATTT 1652
Query 1504 GTGAGGAGGAAATCGAGATATGATCCATTGGCAATACTTGCGCCTGGCCAGAGAATTTTT 1563
|||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1653 GTGAGGAGGAAATCCAGATATGATCCATTGGCAATTCTTGCGCCTGGCCACCGAATTTTT 1712
Query 1564 GAAAAGGCTGTCTCATACTCATGA 1587
||||||| |||||||||||||||
Sbjct 1713 CAAAAGGCAGTCTCATACTCATGA 1736
> AT3G63445.1 | Symbols: | other RNA | chr3:23422778-23426362
REVERSE LENGTH=1739
Length=1739
Score = 364 bits (197), Expect = 1e-99
Identities = 250/275 (91%), Gaps = 6/275 (2%)
Strand=Plus/Minus
Query 1316 TGGTGGCCATCCTGACGTCGGCAGTC-CCAGGGAAGG-AGGATGGAGGA-GGAGTAGAAC 1372
||||||| ||||| || |||||| || |||||| || |||| |||| |||||||||
Sbjct 369 TGGTGGCGATCCTAACATCGGCA-TCTCCAGGGTCGGCAGGA--AAGGATGGAGTAGAAG 313
Query 1373 AGATATTGAAGCGGAACAGAAGAATACTGGAATTCAGTGAAGAAGCAGGGATAGGGTTGA 1432
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 AGATCTTGAGGCGGAACAGAAGAATACTGGAATTCAGTGAAGAAGCAGGGATAGGGTTGA 253
Query 1433 AGCAGTATCTGCCACATTACACAACCAGAGAAGAGTGGAGATCCCATTTCGGGGCCAAGT 1492
|||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||
Sbjct 252 AGCAGTATCTGCCACATTACACGACAAGAGAAGAGTGGAGATCCCATTTCGGGGACAAGT 193
Query 1493 GGGGAGAATTCGTGAGGAGGAAATCGAGATATGATCCATTGGCAATACTTGCGCCTGGCC 1552
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 192 GGGGAGAATTTGTGAGGAGGAAATCCAGATATGATCCATTGGCAATTCTTGCGCCTGGCC 133
Query 1553 AGAGAATTTTTGAAAAGGCTGTCTCATACTCATGA 1587
| |||||||| ||||||| |||||||||||||||
Sbjct 132 ACCGAATTTTTCAAAAGGCAGTCTCATACTCATGA 98
Score = 350 bits (189), Expect = 3e-95
Identities = 225/242 (93%), Gaps = 3/242 (1%)
Strand=Plus/Minus
Query 765 CCTGGATTTTTCAGCTTTTGCCAAGGACCAAGAGCAACTAATATCTG--CA-GATAACAA 821
|||||||||| |||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 859 CCTGGATTTTGCAGCTTTTGCCAAGGACCAAGAGCAACTAATATCTGCCCAGGGCCACAA 800
Query 822 ATTCGATTACATAGAAGGGTTTGTGATAATAAACAGGACAGGCCTCCTGAACAACTGGAG 881
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 799 ATTCGATTACATAGAAGGGTTTGTGATAATAAACAGGACAGGCCTCCTGAACAGCTGGAG 740
Query 882 GTTATCCTTCACCCCGGAAGAGCCTTTAGAAGCAAGCCAATTCAAATCTGATGGAAGGAC 941
||| || |||||| | ||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 739 GTTGTCTTTCACCGCAGAAGAGCCTTTAGAAGCAAGCCAATTCAAGTTTGATGGAAGGAC 680
Query 942 CCTGTATTGTCTGGAGCTAGCCAAGTACTTGAAGCAAGATAACAAAGATGTAATCAACCA 1001
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 679 TCTGTATTGTCTGGAGCTAGCCAAGTATTTGAAGCAAGATAACAAAGACGTAATCAACCA 620
Query 1002 GG 1003
||
Sbjct 619 GG 618
Score = 261 bits (141), Expect = 1e-68
Identities = 160/169 (95%), Gaps = 1/169 (1%)
Strand=Plus/Minus
Query 996 CAA-CCAGGAAGTGAAAGAAACGTTATCAGAACTAAGCTACGTGTCGTCGACACTGTTTT 1054
||| |||||||||||||||||| |||||||| |||||||||||| ||||||||||||||
Sbjct 534 CAATCCAGGAAGTGAAAGAAACATTATCAGAGCTAAGCTACGTGACGTCGACACTGTTTA 475
Query 1055 CAACGGAGGTAACATATGAAGCATTCTTGGACAGGGTACATGTGTCTGAGGTAAAACTTC 1114
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 474 CAACGGAGGTAGCATATGAAGCATTCTTGGACAGGGTACATGTGTCTGAGGTAAAACTCC 415
Query 1115 GATCGAAAGGGCAATGGGAGGTGCCACATCCATGGCTGAACCTGCTGGT 1163
||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 414 GATCGAAAGGGCAGTGGGAGGTGCCACATCCATGGCTGAACCTCCTGGT 366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78363050745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5