BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899363

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21045.1 | Symbols:  | Rhodanese/Cell cycle control phosphat...   654    0.0  
  AT2G20993.1 | Symbols:  | Pseudogene of AT2G21045 | chr2:901857...   211    4e-54


> AT2G21045.1 | Symbols:  | Rhodanese/Cell cycle control phosphatase 
superfamily protein | chr2:9027852-9029020 FORWARD LENGTH=731
Length=731

 Score =  654 bits (354),  Expect = 0.0
 Identities = 400/423 (95%), Gaps = 0/423 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGGAAACAAAACCAAAGACAGTTGAAGATGTTGAGACGGTTGATGTTTACACAGCT  60
            ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct  94   ATGGAGGAAACAAAACCAAAGACCGTTGAAGATGTTGAGACCGTTGATGTTTATACAGCT  153

Query  61   AAAGGTTTTCTTAGTACTGGTCATCGATATCTCGATGTAAGGACAAATGAAGAATTCGCC  120
            ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct  154  AAAGGCTTTCTTAGTACTGGTCACCGATATCTCGACGTAAGGACAAATGAAGAATTTGCC  213

Query  121  AAGAGTCATGTTGAGGATGCTTTGAACATTCCTTATATGTTCCAAACAGATGAAGGTAGG  180
            ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct  214  AAGAGTCATGTTGAGGAGGCTTTGAACATTCCTTATATGTTCAAAACAGATGAAGGTAGG  273

Query  181  GTTATAAATCCTGATTTTCTTCCTCAAGTGGCATCGGTTTGCAAGAAAGATGAACATATG  240
            ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||
Sbjct  274  GTTATAAATCCTGATTTCCTTTCTCAAGTGGCATCGGTTTGCAAGAAAGATGAACATTTG  333

Query  241  ATCGTGGCTTGTAACGCTGGAGGAAGAGGAAGTCGTGCTTGTGTTGATCTTCTCAATGCG  300
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || | |
Sbjct  334  ATCGTGGCTTGTAACGCTGGAGGAAGAGGAAGTCGTGCTTGCGTTGATCTTCTTAACGAG  393

Query  301  GGGTACGAGCATGTGGCTAACATGGGGGGAGGCTACTCGGCTTGGGTTGATGCTGGATTC  360
            |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  394  GGGTACGACCATGTGGCTAACATGGGGGGAGGCTACTCGGCTTGGGTTGACGCTGGATTC  453

Query  361  GCCGGCGACAAACCCCCGGAAGAGCTCAAGATTGCTTGCCAGTTCCGACCAAAGGAAAAC  420
            ||||| ||||||||||||||||| ||||||||||||||| ||||| | ||||||||||||
Sbjct  454  GCCGGGGACAAACCCCCGGAAGACCTCAAGATTGCTTGCAAGTTCAGGCCAAAGGAAAAC  513

Query  421  TAA  423
            |||
Sbjct  514  TAA  516


> AT2G20993.1 | Symbols:  | Pseudogene of AT2G21045 | chr2:9018578-9019036 
FORWARD LENGTH=378
Length=378

 Score =  211 bits (114),  Expect = 4e-54
 Identities = 139/151 (92%), Gaps = 1/151 (1%)
 Strand=Plus/Plus

Query  96   TGTAAGGACAAATGAAGAATTCGCCAAGAGTCATGTTGAGGATGCTTTGAACATTCCTTA  155
            ||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||  
Sbjct  229  TGT-AGGACAAATGAAGAATTTGCCAAGAGTCATGTTGAGGAGGCTTTGAACATTCCTGG  287

Query  156  TATGTTCCAAACAGATGAAGGTAGGGTTATAAATCCTGATTTTCTTCCTCAAGTGGCATC  215
            || |||| |||||||||| ||||||||||||||||||||||| ||| |||||||||||||
Sbjct  288  TACGTTCAAAACAGATGAGGGTAGGGTTATAAATCCTGATTTCCTTTCTCAAGTGGCATC  347

Query  216  GGTTTGCAAGAAAGATGAACATATGATCGTG  246
            |||||||||||||||| ||||| ||||||||
Sbjct  348  GGTTTGCAAGAAAGATAAACATTTGATCGTG  378



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20056831851


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5