BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899380

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21195.2 | Symbols:  | unknown protein; Has 35333 Blast hits...   185    2e-46


> AT2G21195.2 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:9083190-9083909 
FORWARD LENGTH=651
Length=651

 Score =  185 bits (100),  Expect = 2e-46
 Identities = 104/106 (98%), Gaps = 0/106 (0%)
 Strand=Plus/Plus

Query  72   GGTCGACGAATGGAAGGACCCATCGGAGGAAGCTCTCGCCGGCGGCAGAGGAATGTTTTG  131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  150  GGTCGACGAATGGAAGGACCCATCGGAGGAAGCTCTCGCCGGCGGCAGAGGAATGTTTTG  209

Query  132  TGTAGTTCCCTTGACGAAGACTCTGTTGCAGACAGCTTCACAATCA  177
            |||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  210  TGTAGTTCCCTTGACGAAAACTCTGTTTCAGACAGCTTCACAATCA  255


 Score =  163 bits (88),  Expect = 7e-40
 Identities = 96/100 (96%), Gaps = 0/100 (0%)
 Strand=Plus/Plus

Query  181  AACTCAGCCGTCAAATTTCTGGATATGAAGCTTCAGAAATTGGCAAATCCTATGCACAAT  240
            |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  328  AACTCAGCTGTCAAATTTCTGGATATGAAGTTTCAGAAATTGGCAAATCCTATGCACAAT  387

Query  241  CCAAGTGGAGATTCAGGGTCAGAATCAAATGTGTTGGATT  280
            ||||||||||||| ||||||| ||||||||||||||||||
Sbjct  388  CCAAGTGGAGATTTAGGGTCAAAATCAAATGTGTTGGATT  427



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12969079242


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5