BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899400

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21350.1 | Symbols:  | RNA-binding CRS1 / YhbY (CRM) domain ...   501    2e-141
  AT4G39040.1 | Symbols:  | RNA-binding CRS1 / YhbY (CRM) domain ...   243    1e-63 


> AT2G21350.1 | Symbols:  | RNA-binding CRS1 / YhbY (CRM) domain 
protein | chr2:9136451-9137267 REVERSE LENGTH=669
Length=669

 Score =  501 bits (271),  Expect = 2e-141
 Identities = 327/353 (93%), Gaps = 7/353 (2%)
 Strand=Plus/Plus

Query  1    ATGACAGAAATTGGAAGAAGCTCGACTTTGTTGGAGTTGTCTGCCAAGGAGAAGAGAAAG  60
            |||| |||||   ||||||||||| |  | |||||||||||||| || ||||||||||||
Sbjct  322  ATGAGAGAAAACCGAAGAAGCTCGGC--T-TTGGAGTTGTCTGCGAAAGAGAAGAGAAAG  378

Query  61   CTTGCTTCTTACGCACAT-AGTTTGGGTGACAAACTGAAATCTCAGCTCGTAGGCAAGTC  119
            |||||||||||||||||| | |||||||||||||||||||||||| || |||||||||||
Sbjct  379  CTTGCTTCTTACGCACATCA-TTTGGGTGACAAACTGAAATCTCAACTTGTAGGCAAGTC  437

Query  120  TGGCGTTACGGATTCAGTAGTCTTGTCCTTCATAGAGACGCTGGAGAAGAACGAGCTCTT  179
            |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct  438  TGGCGTTACGGATTCAGTCGTCTTGTCCTTCGTAGAGACGCTGGAGAAGAACGAGCTCTT  497

Query  180  AAAGGTGAAAATACACAGGACATGCCCTGGAGAGTTAGAGGACATGATTCTGCATTTGGA  239
            |||||||||||||||||| ||||||||||||||| |||||||||||||||| | ||||||
Sbjct  498  AAAGGTGAAAATACACAGAACATGCCCTGGAGAGCTAGAGGACATGATTCTACGTTTGGA  557

Query  240  GGAAGCCACTGGTTCAGTATCAGTCGGGCAAATTGCGCGGACTGTGATACTCTATCGTCC  299
            |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct  558  GGAAGCCACTGGTTCAGTATCAGTCGGGCAAATTGCGCGGACCGTGATACTTTATCGTCC  617

Query  300  TAGTCCCACCAAATTGAAAGCCGACGAGAAGaaaaaaaCG-AATGAAGAGTAG  351
            |||||||||||||||||||||||||||| | |||||| || ||||||||||||
Sbjct  618  TAGTCCCACCAAATTGAAAGCCGACGAGGACAAAAAA-CGGAATGAAGAGTAG  669


> AT4G39040.1 | Symbols:  | RNA-binding CRS1 / YhbY (CRM) domain 
protein | chr4:18189072-18190556 REVERSE LENGTH=1089
Length=1089

 Score =  243 bits (131),  Expect = 1e-63
 Identities = 225/271 (83%), Gaps = 4/271 (1%)
 Strand=Plus/Plus

Query  64   GCTTCTTACGCACATAGTTTGGGTGACAAACTGAAATCTCAGCTCGTAGGCAAGTCTGGC  123
            ||||||||||| |||||||||||||| ||| |||||| ||| ||||| ||||| ||||| 
Sbjct  505  GCTTCTTACGCGCATAGTTTGGGTGATAAATTGAAATGTCAACTCGTCGGCAAATCTGGT  564

Query  124  GTTACGGATTCAGTAGTCTTGTCCTTCATAGAGACGCTGGAGAAGAACGAGCTCTTAAAG  183
            ||||| ||||| || || || || ||| | ||||| || |||||||||||||||||||||
Sbjct  565  GTTACTGATTCTGTCGTTTTCTCATTCCTCGAGACTCTCGAGAAGAACGAGCTCTTAAAG  624

Query  184  GTGAAAATACACAGGACAT-GCCCTGGA-GAGTTAGAGGACATGATTCTGCATTTGGAGG  241
            |||||||||| || ||||| |||| | | ||| |||||||   | | | |||||||||||
Sbjct  625  GTGAAAATACGCAAGACATCGCCC-G-ATGAGCTAGAGGATGCGGTGCAGCATTTGGAGG  682

Query  242  AAGCCACTGGTTCAGTATCAGTCGGGCAAATTGCGCGGACTGTGATACTCTATCGTCCTA  301
            |||| |||||||| ||| |||| |||||||| | ||||||||||||| | ||| | || |
Sbjct  683  AAGCGACTGGTTCCGTAGCAGTAGGGCAAATAGGGCGGACTGTGATATTGTATAGGCCCA  742

Query  302  GTCCCACCAAATTGAAAGCCGACGAGAAGaa  332
            ||||||||||| ||||||| || | ||||||
Sbjct  743  GTCCCACCAAAATGAAAGCAGAGGCGAAGAA  773



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16437553923


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5