BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg899400 Length=351 Score E Sequences producing significant alignments: (Bits) Value AT2G21350.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain ... 501 2e-141 AT4G39040.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain ... 243 1e-63 > AT2G21350.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain protein | chr2:9136451-9137267 REVERSE LENGTH=669 Length=669 Score = 501 bits (271), Expect = 2e-141 Identities = 327/353 (93%), Gaps = 7/353 (2%) Strand=Plus/Plus Query 1 ATGACAGAAATTGGAAGAAGCTCGACTTTGTTGGAGTTGTCTGCCAAGGAGAAGAGAAAG 60 |||| ||||| ||||||||||| | | |||||||||||||| || |||||||||||| Sbjct 322 ATGAGAGAAAACCGAAGAAGCTCGGC--T-TTGGAGTTGTCTGCGAAAGAGAAGAGAAAG 378 Query 61 CTTGCTTCTTACGCACAT-AGTTTGGGTGACAAACTGAAATCTCAGCTCGTAGGCAAGTC 119 |||||||||||||||||| | |||||||||||||||||||||||| || ||||||||||| Sbjct 379 CTTGCTTCTTACGCACATCA-TTTGGGTGACAAACTGAAATCTCAACTTGTAGGCAAGTC 437 Query 120 TGGCGTTACGGATTCAGTAGTCTTGTCCTTCATAGAGACGCTGGAGAAGAACGAGCTCTT 179 |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 438 TGGCGTTACGGATTCAGTCGTCTTGTCCTTCGTAGAGACGCTGGAGAAGAACGAGCTCTT 497 Query 180 AAAGGTGAAAATACACAGGACATGCCCTGGAGAGTTAGAGGACATGATTCTGCATTTGGA 239 |||||||||||||||||| ||||||||||||||| |||||||||||||||| | |||||| Sbjct 498 AAAGGTGAAAATACACAGAACATGCCCTGGAGAGCTAGAGGACATGATTCTACGTTTGGA 557 Query 240 GGAAGCCACTGGTTCAGTATCAGTCGGGCAAATTGCGCGGACTGTGATACTCTATCGTCC 299 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 558 GGAAGCCACTGGTTCAGTATCAGTCGGGCAAATTGCGCGGACCGTGATACTTTATCGTCC 617 Query 300 TAGTCCCACCAAATTGAAAGCCGACGAGAAGaaaaaaaCG-AATGAAGAGTAG 351 |||||||||||||||||||||||||||| | |||||| || |||||||||||| Sbjct 618 TAGTCCCACCAAATTGAAAGCCGACGAGGACAAAAAA-CGGAATGAAGAGTAG 669 > AT4G39040.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain protein | chr4:18189072-18190556 REVERSE LENGTH=1089 Length=1089 Score = 243 bits (131), Expect = 1e-63 Identities = 225/271 (83%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 64 GCTTCTTACGCACATAGTTTGGGTGACAAACTGAAATCTCAGCTCGTAGGCAAGTCTGGC 123 ||||||||||| |||||||||||||| ||| |||||| ||| ||||| ||||| ||||| Sbjct 505 GCTTCTTACGCGCATAGTTTGGGTGATAAATTGAAATGTCAACTCGTCGGCAAATCTGGT 564 Query 124 GTTACGGATTCAGTAGTCTTGTCCTTCATAGAGACGCTGGAGAAGAACGAGCTCTTAAAG 183 ||||| ||||| || || || || ||| | ||||| || ||||||||||||||||||||| Sbjct 565 GTTACTGATTCTGTCGTTTTCTCATTCCTCGAGACTCTCGAGAAGAACGAGCTCTTAAAG 624 Query 184 GTGAAAATACACAGGACAT-GCCCTGGA-GAGTTAGAGGACATGATTCTGCATTTGGAGG 241 |||||||||| || ||||| |||| | | ||| ||||||| | | | ||||||||||| Sbjct 625 GTGAAAATACGCAAGACATCGCCC-G-ATGAGCTAGAGGATGCGGTGCAGCATTTGGAGG 682 Query 242 AAGCCACTGGTTCAGTATCAGTCGGGCAAATTGCGCGGACTGTGATACTCTATCGTCCTA 301 |||| |||||||| ||| |||| |||||||| | ||||||||||||| | ||| | || | Sbjct 683 AAGCGACTGGTTCCGTAGCAGTAGGGCAAATAGGGCGGACTGTGATATTGTATAGGCCCA 742 Query 302 GTCCCACCAAATTGAAAGCCGACGAGAAGaa 332 ||||||||||| ||||||| || | |||||| Sbjct 743 GTCCCACCAAAATGAAAGCAGAGGCGAAGAA 773 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16437553923 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5