BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899401
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21370.1 | Symbols: XK-1, XK1 | xylulose kinase-1 | chr2:913... 2078 0.0
> AT2G21370.1 | Symbols: XK-1, XK1 | xylulose kinase-1 | chr2:9137473-9140065
REVERSE LENGTH=1561
Length=1561
Score = 2078 bits (1125), Expect = 0.0
Identities = 1333/1432 (93%), Gaps = 20/1432 (1%)
Strand=Plus/Plus
Query 1 ATGCTGATTCTTCGACAATTTCAGATCTCTTCGTTTGAACTCTTTCAATCTCCAAAACAA 60
|||||||||||||| ||||||||||| ||||| ||||| ||||| |||||||||||||||
Sbjct 16 ATGCTGATTCTTCGTCAATTTCAGATATCTTCATTTGAGCTCTTCCAATCTCCAAAACAA 75
Query 61 TCTGGG-TGT--TCTAGTTCAAGGACCAGAACTCGGTTTTACTCTA-ATCTAGGA-AGGA 115
| ||| | | |||||||||||| || || | ||| | | | ||| || |
Sbjct 76 ACAGGGTTTTACTCTAGTTCAAGG---AGTGTTC--CTCTAC-CCAGAACTA-GATTTTA 128
Query 116 GCTCTGATTTCAGAGTTATGAGTGACAATAAAGGAACCAACTTTGAAAACCTTTATCTTG 175
||| ||||||||||||||||||| |||||||||||| |||| |||||| |||||||| |
Sbjct 129 -CTCCGATTTCAGAGTTATGAGTGGCAATAAAGGAACGAACTATGAAAAACTTTATCTGG 187
Query 176 GTATGGATTTTGGTACTTCTGGAGCTCGATTTACAGTTATTGATGAGCAAGGAGAGATTA 235
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 188 GTATGGATTTTGGTACTTCTGGAGGTCGATTTACAGTTATTGATGAGCAAGGAGAGATTA 247
Query 236 AATCACAAGGCAAAAGAGAATATCCTCCTTTCATGAAAGAAGAAAGAATGGATTGGGTGA 295
|| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
Sbjct 248 AAGCACAAGGCAAAAGAGAATATCCTCCTTTCATGAAAGAAGAAAGCATGGGTTGGGCAA 307
Query 296 GCTCATGGAAAGCAACTCTTTTTTCATTGCTAGAGGATATTCCCATTACTGTTCGCTCCC 355
||||||||||||||||||||||||| ||||||||||| |||||| | || ||||||||||
Sbjct 308 GCTCATGGAAAGCAACTCTTTTTTCGTTGCTAGAGGACATTCCCGTCACAGTTCGCTCCC 367
Query 356 TCGTCTCATCCATTTCGCTTGATGGAACTTCTGCAACAACTCTCATTTTAAACAGCAGTG 415
||||||||||||||||||||||||||||||||||||| |||||||| || || | |||||
Sbjct 368 TCGTCTCATCCATTTCGCTTGATGGAACTTCTGCAACTACTCTCATCTT-AA-A-CAGTG 424
Query 416 AGAGTGGAGAAGTTCTGTGTCAACCTTTTCTCTACAATCAGAGCTGCCCTGATGCTCTCC 475
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
Sbjct 425 AGAGTGGAGAAGTTCTGTGTCAACCTTATCTCTACAACCAGAGCTGCCCTGATGCTCTGC 484
Query 476 CAGAGGTCAAGTCTATAGCGCCAGAAAACCACACAGTCTGCTCTGGTTCTTCTACCTTGT 535
|||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||
Sbjct 485 CAGAGGTCAAGTCTATAGCGCCAGCAAACCATACAGTCTGCTCTGGTACTTCTACCTTGT 544
Query 536 GCAAACTTGTCTCATGGTGGAACACTGAGGTGCCAAACAGAGAATCAGCGGTATTGCTGC 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 GCAAACTTGTCTCATGGTGGAACACTGAGGTGCCAAACAGAGAATCAGCGGTATTGCTGC 604
Query 596 ATCAGGCAGACTGGTTGTTGTGGTTACTTCACGGTAGACTCGGTGTGTCAGATTACAATA 655
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 605 ATCAGGCAGACTGGTTGTTGTGGTTACTTCACGGTAGACTCGGAGTGTCAGATTACAACA 664
Query 656 ACGCCTTGAAGGTGGGCTATGATCCTGAGAGTGAATCATATCCATCATGGTTGCTAAGTC 715
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 665 ATGCCTTGAAGGTGGGCTATGATCCTGAGAGTGAATCATATCCATCATGGTTGCTAGGTC 724
Query 716 AGCCTTATTCTCAGTTATTACCTGTGGTGCAAGCTCCTGGAACATCAATATGCAATCTGA 775
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 725 AGCCTTATTCTCAGTTATTACCTAAGGTGCAAGCTCCTGGAACATCAATAGGCAATCTGA 784
Query 776 AAGAAAGCATTAGAAGCCAATTCGGGTTTCCGGATGATTGCATTGTCTGCACCGGTACTA 835
|||||||| ||| ||| ||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 785 AAGAAAGCTTTACAAGGCAATTTGGATTTCCAGATGATTGCATTGTCTGCACCGGTACTA 844
Query 836 CTGATAGCATAGCTGCATTTCTAGCAGCACGTGCGACTCAACCTGGGAAAGCAGTGACTT 895
|||||||||||||||||||||| |||||||| |||||| |||||||||||||||| ||||
Sbjct 845 CTGATAGCATAGCTGCATTTCTTGCAGCACGCGCGACTGAACCTGGGAAAGCAGTAACTT 904
Query 896 CATTGGGTTCGACCTTAGCCATCAAACTTCTCAGCACCAAAAGAGTTGATGATGCGAGGT 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 CATTGGGTTCGACCTTAGCCATCAAACTTCTCAGCACCAAAAGAGTTGATGATGCGAGGT 964
Query 956 ATGGAGTCTACAGTCACCGCCTGGATGACAAATGGTTGGTCGGAGGAGCTTCCAATACTG 1015
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 965 ATGGAGTCTACAGCCACCGCCTGGATGACAAATGGTTGGTCGGAGGAGCTTCCAACACTG 1024
Query 1016 GTGGAGCCATTCTCAGACAGCTCTTTAATGACGAACAATTAGAGAGACTGAGCCAAGAAA 1075
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1025 GTGGAGCCATTCTCAGACAGCTCTTTAGTGACGAACAGTTAGAGAGACTGAGCCAAGAAA 1084
Query 1076 TCAATCCTATGGTCGCATCTCCTCTAGATTACTATCCTCTGCTAA-CTAGCGGTGAAAGA 1134
||||||||||||||| |||||||||||||||||||||| ||| || | ||||||||||||
Sbjct 1085 TCAATCCTATGGTCGGATCTCCTCTAGATTACTATCCTTTGCAAAGC-AGCGGTGAAAGA 1143
Query 1135 TTTCCCATAGCTGATCCTAACTTGGCTCCCAGATTACTTCCACGCCCAGAAAGCGACGTT 1194
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 TTTCCCATTGCTGATCCTAACTTGGCTCCCAGATTACTTCCACGCCCAGAAAGCGACGTT 1203
Query 1195 GAATACTTGCATGGTATCTTGGAATCAATCGCACGTATTGAGGGGAAAGGCTACAAGTTG 1254
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 GAATTCTTGCATGGTATATTGGAATCAATCGCACGTATTGAGGGGAAAGGCTACAAGTTG 1263
Query 1255 CTGAAAGAGATGGGAGCAACGGAGGCCGAGGAAGTGTGGACAGCAGGAGGTGGAGCCAAG 1314
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1264 CTGAAAGAGTTGGGAGCAACGGAGGCCGAGGAAGTGTTGACAGCAGGAGGTGGAGCCAAG 1323
Query 1315 AATGACAAGTGGATAAAGATAAGGCAGCGCGTTCTAGGCTTGCCTGTGAAAAAGGCTC-T 1373
||||||||||||||||||||||||||||| ||| | || |||||||||||||| || | |
Sbjct 1324 AATGACAAGTGGATAAAGATAAGGCAGCGAGTTTTGGGTTTGCCTGTGAAAAAAGC-CGT 1382
Query 1374 CCACACGGAAGCTTCCTATGGAGCTTCTCTTCTTGCGTTAAAGGGCGCAAAA 1425
|||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1383 CCACACTGAAGCTTCCTATGGAGCTTCTCTTCTTGCGCTAAAGGGCGCAAAA 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72188383710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5