BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899415
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21490.1 | Symbols: LEA | dehydrin LEA | chr2:9206016-920712... 582 1e-165
> AT2G21490.1 | Symbols: LEA | dehydrin LEA | chr2:9206016-9207125
REVERSE LENGTH=836
Length=836
Score = 582 bits (315), Expect = 1e-165
Identities = 488/570 (86%), Gaps = 18/570 (3%)
Strand=Plus/Plus
Query 1 ATGGCGGATTTGAAGGACGAACGAGGAAACCCAATCCATCTAACCGATGA-ACACGGAAA 59
||||||||||||| ||||||| ||| || || ||||||||||| || | ||| |||||
Sbjct 86 ATGGCGGATTTGAGGGACGAAAAAGGTAATCCGATCCATCTAACTGA-CACACAGGGAAA 144
Query 60 CCC-GGTG-C-AACTGACTGATGAGTTCGGTAACCCCATGCACCTAACCGGCGTTGCCAG 116
||| || | | |||||||||||| ||||||||||||| |||||||||| |||| ||
Sbjct 145 CCCAATTGTCGACCTGACTGATGAGCACGGTAACCCCATGTACCTAACCGGTGTTGTTAG 204
Query 117 CTCCGCTCCTCAGTATAAGGAGAGTACTACCGGCGACATTGCTGAGCACTCTACTAGCAC 176
|||| |||||||| ||||||||||||||||| |||||||||| |||||| ||||||||||
Sbjct 205 CTCCACTCCTCAGCATAAGGAGAGTACTACCAGCGACATTGCAGAGCACCCTACTAGCAC 264
Query 177 TGTTGAAGGAACACATCCGGTCGATGCAGGAATACATCCGGCAGCTGCTGCTACCACCGC 236
|||| || ||||||||||| | | || | | || | || |||| |||| |||||||
Sbjct 265 CGTTGGAGAAACACATCCGG-C-A-GC-TG-CTCCAGCTGG-TGCTGGTGCTGCCACCGC 318
Query 237 TGCCGCTGCCACAGGAGTCACTGCTGGTACCGGAGCAACCGCCACAGGGCAGCAGCAGCA 296
|||| |||| ||||||||| |||||||||| ||||||||| ||||||||||||| || ||
Sbjct 319 TGCCACTGCGACAGGAGTCTCTGCTGGTACTGGAGCAACCACCACAGGGCAGCAACACCA 378
Query 297 TGGCTCGCTTGAAGAGCATCTTCGTCGGTCTGGAAGTTCATCTAGCTCTAGCTCGGAGGA 356
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 TGGGTCGCTTGAAGAGCATCTTCGTCGGTCTGGAAGTTCATCTAGCTCTAGCTCGGAGGA 438
Query 357 TGATGGGCAAGGAGGGCGGCGGAAGAAGAGCATAAAGGAGAAAATCAAAGAAAAGTTTAG 416
|||||||||||||||| || ||||||||||||||||||||||||| ||||| ||||| |
Sbjct 439 TGATGGGCAAGGAGGGAGGAGGAAGAAGAGCATAAAGGAGAAAATTAAAGAGAAGTTCGG 498
Query 417 TAGCAGCAAGCACAAGGACGAACAAACGCCAAGC-ACAGCCACTACTACTGTCGGATCCA 475
|||| |||| ||||||||||||||||| ||| || || ||||| || || | | | ||
Sbjct 499 TAGCGGCAAACACAAGGACGAACAAACACCA-GCGACCGCCACAACAACAG--G-A-CCT 553
Query 476 -CAACCACTGACCAACCCCACGAGAAGAAGGGCATTCTCGAGAAGATCAAGGACAAACTT 534
| || || |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 554 GCCACTACCGACCAACCTCACGAGAAGAAGGGCATTCTCGAGAAGATCAAGGACAAGCTT 613
Query 535 CCTGGCCACCACAACCATAACCACCCATGA 564
|| |||||||| ||||| ||||||||||||
Sbjct 614 CCAGGCCACCATAACCACAACCACCCATGA 643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27076205233
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5