BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899422
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21550.1 | Symbols: | Bifunctional dihydrofolate reductase/... 2047 0.0
> AT2G21550.1 | Symbols: | Bifunctional dihydrofolate reductase/thymidylate
synthase | chr2:9227209-9230189 FORWARD LENGTH=1479
Length=1479
Score = 2047 bits (1108), Expect = 0.0
Identities = 1354/1474 (92%), Gaps = 11/1474 (1%)
Strand=Plus/Plus
Query 5 CTACTGGTGAGGCAATGTTTATCAATGGCCAAAGCACGGTTTCAGTTAC-A--AGGAGGA 61
|||||||||| | || | || ||||||||||||| | |||||||| || | |||||||
Sbjct 8 CTACTGGTGAAACTATATGTAACAATGGCCAAAGCGCAGTTTCAGTAACAAGGAGGAGGA 67
Query 62 GTTACCAAGTTGTAATAGCGGCGACAAGAGACATGGGTCTTGGTATGGACATGAAACTTC 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 GTTACCAAGTTGTAATAGCGGCGACAAGAGACATGGGTCTTGGTATGGACATGAAACTTC 127
Query 122 CTTGGGATCTACCTACAGATTCTCAGTTTTTCCACGATGTTACAACTAGGACAACCGATC 181
|||||||||||||| |||| | |||||||||||| |||||||||||||||||| ||||||
Sbjct 128 CTTGGGATCTACCTTCAGAGTATCAGTTTTTCCAAGATGTTACAACTAGGACATCCGATC 187
Query 182 CCACGAGGAGGAATGCGACTATAATGGGAAGAAAATCATGGGAATCGACTCCTCTCGAGA 241
|||||| |||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 188 CCACGAAGAGGAACGCGACTATAATGGGAAGAAAATCATGGGAATCTACTCCTCTAGAGA 247
Query 242 TTCGTCCCCTTCCTGGTCGACTTAATATTGTCTTGACAAAGTCTAGCTGCCACAACATTG 301
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 248 TTCGTCCTCTTCCTGGTCGGCTCAATATTGTCTTGACAAAGTCTAGCTGCCACAACATTG 307
Query 302 CCATTGATGAGAATGTGTTGGTGTGT-GATAGCATGGAATCGGCTCTTGAACTTCTAGCC 360
|||||||||||||||| |||||| | | |||||||||||||||||||||||||||||||
Sbjct 308 CCATTGATGAGAATGTACTGGTGTCTAG-TAGCATGGAATCGGCTCTTGAACTTCTAGCC 366
Query 361 ACCGAGCCTTATTCCTTGTCCATTGAGAAGGTCTTTGTCATAGGAGGCGGCGAGTTGTTA 420
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 ACTGAGCCCTATTCCTTGTCCATTGAGAAGGTCTTTGTCATAGGAGGCGGCGAGTTGTTA 426
Query 421 AGGAATTATATGAATGCACCCAGCTGTGATGCTATCCACCTAACCGAAATCGATATAAGC 480
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 427 AGGAATTATATGAATGCATCCATCTGTGATGCTATCCACCTAACCGAAATCGATATAAGC 486
Query 481 GTGCCATGCGACGCATTTGCACCGAGGGTAGATACTTCTCTGTACCATCCGTGGTACTCA 540
|||||||| ||||||||||||||||| || |||||||||||||||| |||||||||||||
Sbjct 487 GTGCCATGTGACGCATTTGCACCGAGAGTGGATACTTCTCTGTACCGTCCGTGGTACTCA 546
Query 541 TCATTTCCAATTGTGGAAAATGGAATTCGGTATAGCTTCAACACTTATGTCCGAAGAAAA 600
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 547 TCATTTCCAGTTGTGGAAAATGGAATTCGGTATAGTTTCAACACTTATGTCCGAAGAAAA 606
Query 601 GATGCCGTTGTTGGATCCGGTGAGAAGAAAAGTGCTGCTG-GATCAGATTTCAAGGAGTA 659
|||||| ||||||| |||||||| |||||||||| ||||| | |||||||| ||||||||
Sbjct 607 GATGCCATTGTTGGCTCCGGTGAAAAGAAAAGTGTTGCTGAG-TCAGATTTGAAGGAGTA 665
Query 660 CTCGTTCTTGCCTAAGATGGTTTTCGAGAGGCATGATGAGTTTGGTTACTTAAATCTTAT 719
|||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct 666 CTCGTTTTTGCCTAAGATGGTTTTCGAGAGGCATGAGGAGTTTGGTTACTTGAATCTTGT 725
Query 720 TCAAAACATTATATCTAGTGGAGACATGAATGACAACAATACTCTTACCAAATTTGGCTG 779
|||||||||||||||||||||||||||||||||||| | ||||||| | |||||||||||
Sbjct 726 TCAAAACATTATATCTAGTGGAGACATGAATGACAATAGTACTCTTTCTAAATTTGGCTG 785
Query 780 TCAGATGCGGTTCAATCTGCGCAAGACTTTCCCGCTTCTCACAACCAAGAAAGTATTCTG 839
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 786 TCAGATGCGGTTCAATCTGCGCAAGACTTTCCCGCTTCTCACGACCAAGAAAATATTCTG 845
Query 840 GCTAGGCGTTGTAGAGGAAATCCTTCAACTTATCAGTGGTTCAATCAATCCCATGGAAAA 899
||| || |||||||||||||| || ||||||||||||||||||| |||||||| ||||||
Sbjct 846 GCTTGGTGTTGTAGAGGAAATACTACAACTTATCAGTGGTTCAAACAATCCCAAGGAAAA 905
Query 900 GGGTAGTAATATATGGGACAGCGATGAAGCTAATGAATATCTTAACAGTTTCGGAGTGAA 959
|||||| |||||||||||| |||||| || || ||||||||| ||||||||||||||||
Sbjct 906 CGGTAGTCATATATGGGACACCGATGAGGCAAAAGAATATCTTGACAGTTTCGGAGTGAA 965
Query 960 TGCCACAGAAGAAGATGGAGACCACCAACACTTGTATGGACTCCAATGGAAACATACTGA 1019
|||||| ||||||||||||||| ||| | |||| ||||||| || ||||||||| |||
Sbjct 966 TGCCACCGAAGAAGATGGAGACAACCCATTCTTGCATGGACTTCACTGGAAACATTGTGA 1025
Query 1020 TGCTAGACTAATTG-TTCAAAAATTCAGTCAGCTCTCTGATGTTATAAACAAGATAAAGA 1078
|||||| | | | ||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1026 TGCTAGGTTTGT-GATTCAAGAATTCAGTCAGCTCTCTGATGTTATAAACAAAATAAAGA 1084
Query 1079 ACAATCCTCATAATCAAAGAATCATGCTTTCGGCGTGTAATCC-TTCAGATTTAAAGTTG 1137
||||||||||| ||||||| ||||||||| | || |||||||| || |||||| ||||||
Sbjct 1085 ACAATCCTCATGATCAAAGGATCATGCTTGCCGCTTGTAATCCATT-AGATTTCAAGTTG 1143
Query 1138 TCGGTATCTCCTTGTCAGACGTTCGCACAGTTCTATGTGGCAAATGGTGAACTTTCTAGT 1197
||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 1144 TCGGTATCTCCTTGTCATACGTTCACACAGTTCTATGTGGCAAATGGTGAAGTTTCTTGT 1203
Query 1198 CAAATCTACCAGAGCTCAACAGAAGCGAGTATCGAGATTCCTTTCAGTATCACTACATAC 1257
||||| ||||| |||||||| ||||||||||||| |||||||||||||||| ||||||||
Sbjct 1204 CAAATATACCAAAGCTCAACCGAAGCGAGTATCGGGATTCCTTTCAGTATCGCTACATAC 1263
Query 1258 TCTCTTTTGACATGCATCATCGCTCATCTTTGCGATCTTGTTGCTGGTGATTTCATCTAT 1317
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||
Sbjct 1264 TCTCTTTTGACATGCATCATCGCTCATGTTTGCGATCTTGGAGCTGGTGATTTCATCCAT 1323
Query 1318 GTGATTGGACAAGCCCGTATTAATAAAGCTCGCGTCAAGGCTATACAAAAACAGCTTCAA 1377
||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1324 GTGATTGGACAAGCCTATATTAACAAAGCTCACGTCAAGGCTATACAAAAACAGCTTCAA 1383
Query 1378 ATCTCCCCCAAACCGTTCCCGATTTTAAAAATCAACCCTGAGaaaaaaaaGATGGATAAC 1437
|||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 1384 ATCTCCCCTAAACCCTTCCCGATTTTGAAAATCAACCCTGAGAAAAAGAAGATGGACAAC 1443
Query 1438 TTTGAGGCCTCAGATTTGGAACTCCTGGGGATAT 1471
||||||||||| |||||||||||| || ||||||
Sbjct 1444 TTTGAGGCCTCTGATTTGGAACTCATGAGGATAT 1477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72640188615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5