BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899427
Length=1563
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21590.1 | Symbols: APL4 | Glucose-1-phosphate adenylyltrans... 2462 0.0
AT4G39210.1 | Symbols: APL3 | Glucose-1-phosphate adenylyltrans... 1487 0.0
> AT2G21590.1 | Symbols: APL4 | Glucose-1-phosphate adenylyltransferase
family protein | chr2:9238482-9242440 FORWARD LENGTH=2034
Length=2034
Score = 2462 bits (1333), Expect = 0.0
Identities = 1497/1575 (95%), Gaps = 15/1575 (1%)
Strand=Plus/Plus
Query 1 ATGGATTCTTCTTACTACTTTGCCTTGGGGACAAGTAGTTCTATTCTGCCAAAACTCTGT 60
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 173 ATGGATTCTTCTTACTCCTTTGCCTTGGGGACAAGTAGTTCTATTTTGCCAAAACTCAGT 232
Query 61 TTCAAGAATGTAGAGAACAGATTTTGGGGTGAGAAGATCAACAACAATGGTTTCTTTAAA 120
|||| |||||||||||||||||||| |||||||||| ||||||||||||||| | ||||
Sbjct 233 TTCAGGAATGTAGAGAACAGATTTTATGGTGAGAAGAACAACAACAATGGTTTGTGTAAA 292
Query 121 C-TTTCTAAATCAGATTTGGGCTCC----A----A-GAATCGAAAGTTCAAGCGCAGTGT 170
| ||| | |||||||||||||||| | | ||||| ||||||||||| | ||||
Sbjct 293 CGTTT-TGGATCAGATTTGGGCTCCAAGAAGTTTAGGAATCAAAAGTTCAAGCACGGTGT 351
Query 171 TGTTTACGCTGTTGCCACTTCGA-ATAACCCAAAAAAGGCTATGACAGTAAAGCCTTCCA 229
||||||||||||||||||||| | |||| |||||||||||||||||||||||| ||||||
Sbjct 352 TGTTTACGCTGTTGCCACTTC-AGATAATCCAAAAAAGGCTATGACAGTAAAGACTTCCA 410
Query 230 TGTTTGAGAGAAGAAAGGCAGACCCGCAAAACGTGGCTGCAATCATTCTAGGAGGAGGTA 289
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
Sbjct 411 TGTTTGAGAGAAGAAAGGTAGACCCGCAAAATGTGGCTGCAATCATTCTAGGAGGAGGCA 470
Query 290 ATGGAGCTAAACTCTTCCCTCTTACAATGAGAGCCGCAACACCAGCTGTTCCTGTTGGTG 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 ATGGAGCTAAACTCTTCCCTCTTACAATGAGAGCCGCAACACCAGCTGTTCCTGTTGGTG 530
Query 350 GATGCTACAGGCTGATCGATATTCCGATGAGTAACTGCATTAACAGCTGCATCAACAAGA 409
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 531 GATGCTACAGGCTGATCGATATCCCGATGAGTAACTGTATTAACAGCTGCATCAACAAGA 590
Query 410 TCTTTGTGCTGACACAATTCAACTCTGCTTCCCTCAACCGACATTTAGCACGCACTTATT 469
| |||||||||||||| |||||||| |||||||| || |||||||||||||| |||||||
Sbjct 591 TATTTGTGCTGACACAGTTCAACTCAGCTTCCCTTAATCGACATTTAGCACGAACTTATT 650
Query 470 TTGGGAATGGCATAAACTTCGGAGGTGGTTTCGTAGAGGTTCTTGCTGCAACACAAACAC 529
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 651 TTGGGAATGGCATAAACTTTGGAGGTGGTTTCGTAGAGGTTCTTGCTGCTACACAAACAC 710
Query 530 CAGGGGAAGCTGGGAA-AATGTGGTTTCAAGGAACAGCAGATGCTGTCAGAAAATTCCTC 588
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 711 CAGGGGAAGCTGGGAAGAA-GTGGTTTCAAGGAACAGCAGATGCTGTCAGAAAATTCCTC 769
Query 589 TGGGTGTTTGAGGATGCCAAGAACAGGAACATTGAGAACATACTTATTTTGTCTGGAGAT 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 TGGGTGTTTGAGGATGCCAAGAACAGGAACATTGAGAACATACTTATTTTGTCTGGAGAT 829
Query 649 CATCTCTATAGAATGAACTACATGGACTTTGTTCAGTCTCATGTCGATAGTAATGCAGAT 708
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 830 CATCTCTATAGAATGAACTACATGGACTTTGTTCAGTCTCATGTGGATAGTAATGCGGAT 889
Query 709 ATTACTCTTTCGTGTGCACCAGTCAGTGAAAGCCGTGCATCAAATTTTGGTCTAGTGAAG 768
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 890 ATTACTCTTTCGTGTGCACCAGTTAGTGAAAGCCGTGCATCAAATTTTGGTCTAGTAAAG 949
Query 769 ATTGATAGAGGTGGGCGTGTAATCCATTTCTCCGAGAAACCAACGGGAGTCGATCTGAAA 828
|||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 950 ATTGATCGAGGTGGGCGTGTAATCCATTTCTCCGAGAAACCAACAGGAGTCGACCTGAAA 1009
Query 829 TCAATGCAAACAGACACAACAATGCTTGGACTGTCTCATCAAGAAGCAACAGATTCTCCA 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 TCAATGCAAACAGACACAACAATGCTTGGACTGTCTCATCAAGAAGCAACAGATTCTCCA 1069
Query 889 TACATTGCATCAATGGGAGTTTATTGTTTCAAAACTGAAGCTTTGCTGAACCTTCTAACA 948
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1070 TACATTGCATCAATGGGAGTTTATTGTTTCAAAACCGAAGCTTTGCTGAACCTTCTAACA 1129
Query 949 AGGCGGTATCCGAGTTCCAATGACTTTGGATCTGAAATTATTCCTGCAGCCATAAGAGAT 1008
|| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1130 AGACAGTATCCGAGTTCCAATGACTTTGGATCTGAAGTTATTCCTGCAGCCATAAGAGAT 1189
Query 1009 CATGATGTTCAAGGATACATATTCCGAGATTACTGGGAGGATATTGGAACTATAAAGACA 1068
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1190 CACGATGTTCAAGGATACATATTCAGAGATTACTGGGAGGATATTGGAACTATAAAGACA 1249
Query 1069 TTCTATGAGGCTAATTTAGCTCTTGTTGAGGAGCGGCCAAAGTTTGAATTCTATGATCCA 1128
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1250 TTTTATGAGGCTAATTTAGCTCTTGTTGAGGAGCGACCAAAGTTTGAATTCTATGATCCA 1309
Query 1129 GACACTCCGTTCTACACTTCTCCTCGGTTCCTCCCACCAACCAAAGCTGAGAAATGTCGC 1188
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1310 GAAACTCCGTTCTACACTTCTCCTCGGTTCCTCCCACCAACAAAAGCTGAGAAATGTCGG 1369
Query 1189 ATGGTAGATTCGATAATCTCACACGGATGTTTCCTGCGAGAATGCAGCGTCCAACGTTCC 1248
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1370 ATGGTAGATTCAATAATCTCACATGGATGTTTCCTGCGAGAATGCAGCGTCCAACGTTCA 1429
Query 1249 ATCATTGGTGAACGGTCACGTCTAGACTATGGAGTTGAGCTTCAGGATACATTGATGTTA 1308
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1430 ATCATTGGTGAACGATCACGTCTAGACTACGGGGTTGAGCTTCAGGATACATTGATGTTA 1489
Query 1309 GGTGCAGATTACTACCAAACTGAATCTGAAATTGCATCTCTATTAGCAGAAGGAAAGGTT 1368
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1490 GGTGCAGATTACTACCAAACTGAGTCTGAGATTGCATCTCTATTAGCAGAAGGAAAGGTT 1549
Query 1369 CCAATTGGCATTGGTAGAGACACAAAGATCAGGAAATGCATCATTGACAAGAATGCTAAG 1428
|||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1550 CCAATTGGTATTGGTAAAGACACAAAAATCAGGAAATGCATCATTGACAAGAATGCTAAG 1609
Query 1429 ATCGGTAAAAACGTGATCATCATGAACAAAGGCGATGTACAAGAAGCGGATAGGCCAGAG 1488
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1610 ATCGGTAAAAACGTGATCATCATGAACAAAGGCGATGTACAAGAAGCAGATAGGCCAGAG 1669
Query 1489 GAAGGATTCTATATTCGATTGGGAATCACTGTGATAGTCGAAAAGGCGACAATTCAAGAC 1548
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1670 GAAGGATTCTACATTCGATCAGGAATCACTGTGATAGTCGAAAAGGCGACAATTCAAGAT 1729
Query 1549 GGTACTGTAATATGA 1563
|||||||||||||||
Sbjct 1730 GGTACTGTAATATGA 1744
> AT4G39210.1 | Symbols: APL3 | Glucose-1-phosphate adenylyltransferase
family protein | chr4:18259609-18263417 FORWARD LENGTH=1959
Length=1959
Score = 1487 bits (805), Expect = 0.0
Identities = 1335/1588 (84%), Gaps = 47/1588 (3%)
Strand=Plus/Plus
Query 1 ATGGATTCTTCTTACTACTTT-GCCTTGGGGACAAGTAGTTCTATTCTGCCAAAACTCTG 59
|||||||||| || | ||||| | ||||||||||| | | | || ||| ||| | |
Sbjct 158 ATGGATTCTTGTTGCAACTTTAG-CTTGGGGACAA-AAACTGTCTT-GGCC-AAAGACAG 213
Query 60 TTTCAAGAATGTAGAGAACAGATTTTGGGGTGAGAAGATCAACAACAATGGTTTCTTTAA 119
|||||||||||||||||||| ||||| ||||||||||||||| | || | |||| ||
Sbjct 214 TTTCAAGAATGTAGAGAACAAATTTTTGGGTGAGAAGATCAA-AGGAA--GCGTCTTGAA 270
Query 120 -ACTTTCTAAATCAGATTTGGGCTCCAAGAA--TC-GAAA--G----TTCAAGCGCAGTG 169
|||| | ||||||||| | |||||||| || |||| | || | || | |||
Sbjct 271 GCCTTT-TTCTTCAGATTTGAGTTCCAAGAAGTTCAGAAATCGAAAATTGAGGCCCGGTG 329
Query 170 TTGTTTACGCTGTTGCCACTTCGAATAACCCAAAAAAGGCTATG-ACAGTAAAGCCTTCC 228
||| ||||||| |||| || || || || | ||| ||||| || | | | || ||||||
Sbjct 330 TTGCTTACGCTATTGCTACCTCAAAGAATGCTAAAGAGGCTTTGAAAAATCAA-CCTTCC 388
Query 229 ATGTTTGAGAGAAGAAAG-GCAGACCCGCAAAACGTGGCTGCAATCATTCTAGGAGGAGG 287
|||||||||||||| ||| ||||| || |||| ||||||||||||||||||||||||||
Sbjct 389 ATGTTTGAGAGAAG-AAGAGCAGATCCTAAAAATGTGGCTGCAATCATTCTAGGAGGAGG 447
Query 288 TAATGGAGCTAAACTCTTCCCTCTTA-CAATGAGAGCCGCAACACCAGCTGTTCCTGTTG 346
|||||||||||||||| ||||||| ||| | |||| |||||||| ||||||||||| |
Sbjct 448 CGATGGAGCTAAACTCTTTCCTCTTACCAA-GCGAGCAGCAACACCTGCTGTTCCTGTGG 506
Query 347 GTGGATGCTACAGGCTGATCGATATTCCGATGAGTAACTGCATTAACAGCTGCATCAACA 406
|||||||||| ||| |||||||||| ||||||||||| ||||||||||| ||||| ||||
Sbjct 507 GTGGATGCTATAGGATGATCGATATCCCGATGAGTAATTGCATTAACAGTTGCATAAACA 566
Query 407 AGATCTTT-GTGCTGACACAATTCAACTCTGCTTCCCTCAACCGACATTTAGCACGCACT 465
|||| ||| |||||||| || || ||||| ||||||||||| || ||||| || || |||
Sbjct 567 AGAT-TTTCGTGCTGACTCAGTTTAACTCGGCTTCCCTCAATCGCCATTTGGCTCGTACT 625
Query 466 TATTTTGGGAATGGCATAAACTTCGGAGGTGGTTTCGTAGAGGTTCTTGCTGCAACACAA 525
||||||||||||||||||||||| |||| |||||| || |||||||| ||||| ||||||
Sbjct 626 TATTTTGGGAATGGCATAAACTTTGGAGATGGTTTTGTTGAGGTTCTGGCTGCTACACAA 685
Query 526 ACACCAGGGGAAGCTGGGAAAATGTGGTTTCAAGGAACAGCAGATGCTGTCAGAAAATTC 585
|| || || ||||| ||||||| |||||||||||| ||||| |||||||| ||||||||
Sbjct 686 ACTCCTGGTGAAGCCGGGAAAAAGTGGTTTCAAGGCACAGCTGATGCTGTGAGAAAATTT 745
Query 586 CTCTGGGTGTTTGAGGATGCCAAGAACAGGAACATTGAGAACATACTTATTTTGTCTGGA 645
|| ||||||||||||||||| |||||||||||||||||||| ||| | || |||||||||
Sbjct 746 CTGTGGGTGTTTGAGGATGCTAAGAACAGGAACATTGAGAATATAATCATCTTGTCTGGA 805
Query 646 GATCATCTCTATAGAATGAACTACATGGACTTTGTTCAGTC-TCATGTCGATAGTAATGC 704
||||| || |||||||||||||| ||||||||||||||| | |||||||||||||| ||
Sbjct 806 GATCACCTATATAGAATGAACTATATGGACTTTGTTCAG-CACCATGTCGATAGTAAAGC 864
Query 705 AGATATTACTCTTTCGTGTGCACCAG-TCAGTGAAAGCCGTGCATCAAATTTTGGTCTAG 763
||||||||||||||||| || || | | | ||| |||||||| || | | ||| || |
Sbjct 865 CGATATTACTCTTTCGTGCGCGCCGGTTGA-TGAGAGCCGTGCGTCGGAGTATGGACTGG 923
Query 764 TGAAGATTGATAGAGGTGGGCGTGTAATCCATTTCTCCGAGAAACCAAC-GGGAGTCGAT 822
| || |||||| || | ||||||||| |||||||||| ||||||||||| || | |||||
Sbjct 924 TCAATATTGATCGAAGCGGGCGTGTAGTCCATTTCTCTGAGAAACCAACTGGCA-TCGAT 982
Query 823 CTGAAATCAATGCAAACAGACACAACAATGCTTGGACTGTCTCATCAAGAAGCAACAGAT 882
||||||||||||||||| || || || |||| |||||||||||||||||||||| || |
Sbjct 983 CTGAAATCAATGCAAACCGATACTACTATGCATGGACTGTCTCATCAAGAAGCAGCAAAA 1042
Query 883 TCTCCATACATTGCATCAATGGGAGTTTATTGTTTCAAAACTGAAGCTTTGCTGAACCTT 942
|||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 1043 TCTCCATACATTGCGTCAATGGGAGTTTATTGTTTCAAAACCGAAGCTTTACTGAAGCTT 1102
Query 943 CTAACAAGGCGGTATCCGAGTTCCAATGACTTTGGATCTGAAATTATTCCTGCAGCCATA 1002
|| ||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1103 CTGACATGGCGGTATCCGAGTTCCAATGACTTTGGGTCTGAAATTATTCCTGCAGCTATA 1162
Query 1003 AGAGATCATGATGTTCAAGGATACATATTCCGAGATTACTGGGAGGATATTGGAACTATA 1062
| |||||| |||||||||||||||| | | |||| || ||||| || || ||||||||
Sbjct 1163 AAAGATCACAATGTTCAAGGATACATCTACAGAGACTATTGGGAAGACATCGGAACTATT 1222
Query 1063 AAGACATTCTATGAGGCTAAT-TTAGCTCTTGTTGAGGAGCGGCCAAAGTTTGAATTCTA 1121
|||| |||||||| |||||| || |||||||| ||||||| || |||||||| || ||
Sbjct 1223 AAGAGTTTCTATGAAGCTAATATT-GCTCTTGTCGAGGAGCATCCCAAGTTTGAGTTTTA 1281
Query 1122 TGATCCAG-ACACTCCGTTCTACACTTCTCCTCGGTTCCTCCCACCAACCAAAGCTGAGA 1180
||| ||| | || || |||||||||||||||||||| || ||||| |||||| | ||||
Sbjct 1282 CGAT-CAGAATACACCTTTCTACACTTCTCCTCGGTTTCTACCACCCACCAAAACCGAGA 1340
Query 1181 AATGTCGCATGGTAGATTCGATAATCTCACACGGATGTTTCCTGCGAGAATGCAGCGTCC 1240
| || || || ||| ||||| |||||||||||||||||||| || ||||||||||| |||
Sbjct 1341 AGTGCCGGATTGTAAATTCGGTAATCTCACACGGATGTTTCTTGGGAGAATGCAGCATCC 1400
Query 1241 AACGTTCCATCATTGGTGAACGGTCACGTCTAGACTATGGAGTTGAGCTTCAGGATACAT 1300
|||||||||| ||||||||| | |||||||| |||||||| ||||||||||||||||| |
Sbjct 1401 AACGTTCCATTATTGGTGAAAGATCACGTCTTGACTATGGTGTTGAGCTTCAGGATAC-T 1459
Query 1301 -TGATGTTAGGTGCAGATTA-CTACCAAACTGAATCTGAAATTGCATCTCT-ATTAGCAG 1357
| |||||||| || || || |||||||| |||||||| || || ||||| || || |
Sbjct 1460 CTTATGTTAGGAGCGGA-TAGTTACCAAACCGAATCTGAGATCGCGTCTCTGCTT-GCGG 1517
Query 1358 AAGGAAAGGTTCCAATTGGCATTGGTAGAGACACAAAGATCAGGAAATGCATCATTGACA 1417
||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1518 AAGGAAATGTTCCAATTGGCATTGGCCGAGATACAAAGATCAGGAAATGCATCATTGACA 1577
Query 1418 AGAATGCTAAGATCGGTAAAAACGTGATCATCATGAACAAAGGCGATGTACAAGAAG-CG 1476
||||||| |||||||| ||||||||| | ||||||||||||| ||||| ||| || |
Sbjct 1578 AGAATGCAAAGATCGGGAAAAACGTGGTGATCATGAACAAAGATGATGTT-AAGGAGGCT 1636
Query 1477 GATAGGCCAGAGGAAGGATTCTATATTCGAT-TGGGAATCACTGTGATAGTCGAAAAGGC 1535
||||||||||||||||||||||| ||||||| ||| |||||||||| | |||||||||||
Sbjct 1637 GATAGGCCAGAGGAAGGATTCTACATTCGATCTGG-AATCACTGTGGTTGTCGAAAAGGC 1695
Query 1536 GACAATTCAAGACGGTACTGTAATATGA 1563
|| ||| ||||||||||||| ||||||
Sbjct 1696 CACCATTAAAGACGGTACTGTGATATGA 1723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77158237665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5