BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899434

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21640.1 | Symbols:  | Encodes a protein of unknown function...   460    3e-129


> AT2G21640.1 | Symbols:  | Encodes a protein of unknown function 
that is a marker for oxidative stress response. | chr2:9254459-9255625 
FORWARD LENGTH=536
Length=536

 Score =  460 bits (249),  Expect = 3e-129
 Identities = 294/316 (93%), Gaps = 2/316 (1%)
 Strand=Plus/Plus

Query  1    ATGGCTTCCCAGACAAAGCAAACCGTGGTGGATA-CACAGAAAATTGAAACCGAGAACCC  59
            ||||||||||||||||| |||||||||||||||| || ||||||| ||||||||||||||
Sbjct  50   ATGGCTTCCCAGACAAATCAAACCGTGGTGGATACCA-AGAAAATCGAAACCGAGAACCC  108

Query  60   GCCAAAACCGGAAGTGCCTTTATCATCATGCAGGAAGAGGGTGAAGGATGATAATGCCAC  119
            |||||||||| ||||||||  ||||||||||||||||||||||||||||||||| |||||
Sbjct  109  GCCAAAACCGCAAGTGCCTGCATCATCATGCAGGAAGAGGGTGAAGGATGATAACGCCAC  168

Query  120  TTTCTTTGAAAACCTCAAGGATCACATGGATGAATTCATCCATGCCTCAATGGATGAACA  179
            |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  169  TTTCTTTGCAAACCTCAAGGATCACATGGATGAATTCATACATGCCTCAATGGATGAACA  228

Query  180  CAAGACTTGTTTCAAAAACACCATGAACAAGATGTTTGGGACCTTTTCGAAGTCTGATGC  239
            ||||||||||||||||||||||||| ||||||| || |||| ||| || ||| | || ||
Sbjct  229  CAAGACTTGTTTCAAAAACACCATGGACAAGATATTCGGGAGCTTCTCCAAGGCGGAGGC  288

Query  240  AGTTGCAGAGAAGCAAGTTGAGGCTAAGGAAGTCGTCGAGATTCACTCTCCTCTTCAGGC  299
            |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
Sbjct  289  AGTTGCAGAGAAGCAAATTGAGGCTAAGGAAGTGGTCGAGATTCACTCTCCTCTTCAGAC  348

Query  300  AGCAGTGACTAAGTAG  315
            ||||||||||||||||
Sbjct  349  AGCAGTGACTAAGTAG  364



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14627914959


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5