BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899437
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21680.1 | Symbols: | Galactose oxidase/kelch repeat superf... 682 0.0
AT2G29600.1 | Symbols: | Galactose oxidase/kelch repeat superf... 63.9 3e-09
AT2G29800.1 | Symbols: | Galactose oxidase/kelch repeat superf... 62.1 1e-08
AT2G29780.1 | Symbols: | Galactose oxidase/kelch repeat superf... 56.5 6e-07
> AT2G21680.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:9267730-9269019 FORWARD LENGTH=1290
Length=1290
Score = 682 bits (369), Expect = 0.0
Identities = 430/459 (94%), Gaps = 5/459 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTTAATCTCTGAAACTTCCGACGACGGCTCTAATGGCGGCAATCATCaaaaaaag 60
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||
Sbjct 1 ATGGTTTTAATCTCTGAAACTTCCGACGACGGCTCTACTGGCGGCGATCATCAAATCAAG 60
Query 61 aaacctaaggaagaagagaatcgaaacaagaaactgaaagaaaagGTTGTTAAAGTGTCG 120
|||||||| |||||||| |||||||||||||| |||||||||| | ||| | ||||||
Sbjct 61 AAACCTAAAAAAGAAGAGGATCGAAACAAGAAATTGAAAGAAAA-G--GTTCAGGTGTCG 117
Query 121 CTACCGATTCCA-AACGAACTCATCTTACGTTGCTTCCTACTCGTTCGGAGATGTCACCA 179
||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CTACCAATTCCAGAA-GAACTCATCTTACGTTGCTTCCTACTCGTTCGGAGATGTCACCA 176
Query 180 CCCGTCGCTTTCCCTCGTCTGTAGTTCCTTCCATCGTCTCATGTCGAAGCTCTACGACGA 239
||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| ||
Sbjct 177 CCCGTCGCTTTCCCTCGTCTGCAGATCCTTCCATAGTCTCATGTCGAAGCTCTACGATGA 236
Query 240 TCGCTTGCGTCTCGGCTACACAGAAAACGTTCTTTACGCCTACGTTGGATTCCCTCCTGT 299
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 237 TCGCTTGCGTCTCGGCTACACCGAAAACGTTCTTTACGCCTACGTTGGATTCCCTCCTGT 296
Query 300 TGAAAACCCTAGCTGGTACATTCTCCATCGGAAACCCTATCGATACTTGCCTAACACGAT 359
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 297 TGAAAACCCTAGCTGGTACATTCTCCATCGTAAACCCTATCGAAACTTGCCTAACACGAT 356
Query 360 TTCTTTAAAACTGTGCAAACTCGATTCCCTCCCTCCCATGCCTTGGAGATCTACTGTCGT 419
||| || ||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 357 TTCGTTGAAATTGTGCAAAATCGATTCCCTCCCTCCCATGCCTTGGGGATCTACTGTCGT 416
Query 420 CACTATCGGATCGGATATCTATGTCATCGGTGGACGCGT 458
||||||||||||||||||||||||||| |||||||||||
Sbjct 417 CACTATCGGATCGGATATCTATGTCATTGGTGGACGCGT 455
Score = 652 bits (353), Expect = 0.0
Identities = 495/562 (88%), Gaps = 16/562 (3%)
Strand=Plus/Plus
Query 626 AGAGTTGGAGTTCTGTGCCTGGTCCATACCCTAAAGCGTTTGAAAGAGAAGAGTTTCTGA 685
||||||||||||||||||| ||||| |||||| ||||||||| ||||| |||||||||||
Sbjct 734 AGAGTTGGAGTTCTGTGCCAGGTCCGTACCCTGAAGCGTTTGGAAGAGGAGAGTTTCTGA 793
Query 686 CATATGCGGTGATGAAGGAGAAGATATACTGTTTGGATCTTTTTAGCAATGTTCATATTT 745
||||||||||||||||||||||||| ||||||||||||||| | ||||| |||||||||
Sbjct 794 CATATGCGGTGATGAAGGAGAAGATTTACTGTTTGGATCTTACTCGCAATATTCATATTT 853
Query 746 ATGATCCCAAGGAAAGTAAATGGGAGTCTTGGGTTTC-TGGAGCGTTGAGTTATTTTTGG 804
||||||| |||||||||||||||||||||| || || |||| |||||||| || ||||
Sbjct 854 ATGATCCTAAGGAAAGTAAATGGGAGTCTT-GGACTCATGGACCGTTGAGTGCTTCTTGG 912
Query 805 AATGATTCGTCTTGTGTGATTGATAATTTGCTGTTTTGCAAGAATACAAT-AGTGCGGTT 863
|||||||||||||||||| ||||||||||||||||||||| ||||| || |||| ||
Sbjct 913 AATGATTCGTCTTGTGTGGTTGATAATTTGCTGTTTTGCATCAATAC-ATCAGTGTATTT 971
Query 864 CCATGGATGGCGGCCAGTAAAAATATATGATCCAGAGCGGAAGGTTTGGTGTTT-CTTGG 922
|| ||||| ||||| |||||||||||||||||||| |||| ||||| ||| ||||
Sbjct 972 CCTTGGAT---GGCCAATAAAAATATATGATCCAGAGAAGAAGACTTGGT-TTTACTTGC 1027
Query 923 AAGGTTTACAAGGTTTTCCAG--AA-AATATCTTTCTCGATGAATGTAAAATGGCTAATT 979
||||||||||||||||||||| || | ||||| | |||| || ||||||||||||||
Sbjct 1028 AAGGTTTACAAGGTTTTCCAGCTAATGGTCTCTTTGTGGATGGATATAAAATGGCTAATT 1087
Query 980 TTGGTGGGAAGTTGCTGATTTTGGGCGCTGATGTG-AGCCGGATTAGGGGGAATGACGGT 1038
|||| ||||||||| |||||||| ||||||||||| | |||| ||||| || ||||| ||
Sbjct 1088 TTGGCGGGAAGTTGGTGATTTTGAGCGCTGATGTGCA-CCGGCTTAGGCGGTATGACTGT 1146
Query 1039 AGGAAAAGAGAGATTTGGTGCATAGAGATTGCTTGGGAAAGAAAGGAAAATGGTAGATTT 1098
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1147 AGGAAAAGAGAGATTTGGTGCATAGAGATTGCTTGGGAAAGAAAGGAAGATGGTACATTT 1206
Query 1099 TGGGGGAAGGTCGAATCAGTCGCGGTTGTGCTTACACCAACAAAGACGTCTTCTGTTGAT 1158
|||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||
Sbjct 1207 TGGGGGAAGGTCGAATCAGTGGCGGTTGTGCTTACACCAGCAAAGACGACTTCTGTTGA- 1265
Query 1159 CCCTTTGTAGAACTGTTACGGT 1180
| ||||| |||||||||||||
Sbjct 1266 CA-TTTGTGGAACTGTTACGGT 1286
Score = 132 bits (71), Expect = 9e-30
Identities = 83/89 (93%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 532 CACGAGTATCGCTCGCTCCCTAGTATGAAGGTGGCTCGCTGCCGTGCAGCCGCAGGTGTA 591
|||||||||||||| ||||| ||||||||| |||||||||| || |||||||| ||||||
Sbjct 595 CACGAGTATCGCTCCCTCCCGAGTATGAAGATGGCTCGCTGTCGCGCAGCCGCGGGTGTA 654
Query 592 ATTGACGGAAAGATTTATGTGATCGGAGG 620
|||||||||||||||||||||||||||||
Sbjct 655 ATTGACGGAAAGATTTATGTGATCGGAGG 683
> AT2G29600.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:12655151-12657296 FORWARD LENGTH=2057
Length=2057
Score = 63.9 bits (34), Expect = 3e-09
Identities = 38/40 (95%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 10 ATCTCTGAAACTTCCGACGACGGCTCTAATGGCGGCAATC 49
||||||||||||||||||||||||||||| |||||| |||
Sbjct 520 ATCTCTGAAACTTCCGACGACGGCTCTAACGGCGGCGATC 559
> AT2G29800.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:12722939-12724602 REVERSE LENGTH=1565
Length=1565
Score = 62.1 bits (33), Expect = 1e-08
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 10 ATCTCTGAAACTTCCGACGACGGCTCTAATGGCGGC 45
||||||||||||||||||||||||||||| ||||||
Sbjct 10 ATCTCTGAAACTTCCGACGACGGCTCTAACGGCGGC 45
> AT2G29780.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:12717786-12719328 REVERSE LENGTH=1467
Length=1467
Score = 56.5 bits (30), Expect = 6e-07
Identities = 54/65 (83%), Gaps = 3/65 (5%)
Strand=Plus/Plus
Query 1 ATGGTTTTAATCTCTGAAACTTCCGACGACGGCTCTAATGGCGGCAATCATCaaaaaaag 60
|||| | ||||||||||||||||||||||||||||| | || ||| | | |||| || |
Sbjct 1 ATGGCTATAATCTCTGAAACTTCCGACGACGGCTCTCACGGTGGCG-T-ACCAAACAA-G 57
Query 61 aaacc 65
|||||
Sbjct 58 AAACC 62
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58031830020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5