BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg899437 Length=1182 Score E Sequences producing significant alignments: (Bits) Value AT2G21680.1 | Symbols: | Galactose oxidase/kelch repeat superf... 682 0.0 AT2G29600.1 | Symbols: | Galactose oxidase/kelch repeat superf... 63.9 3e-09 AT2G29800.1 | Symbols: | Galactose oxidase/kelch repeat superf... 62.1 1e-08 AT2G29780.1 | Symbols: | Galactose oxidase/kelch repeat superf... 56.5 6e-07 > AT2G21680.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr2:9267730-9269019 FORWARD LENGTH=1290 Length=1290 Score = 682 bits (369), Expect = 0.0 Identities = 430/459 (94%), Gaps = 5/459 (1%) Strand=Plus/Plus Query 1 ATGGTTTTAATCTCTGAAACTTCCGACGACGGCTCTAATGGCGGCAATCATCaaaaaaag 60 ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||| Sbjct 1 ATGGTTTTAATCTCTGAAACTTCCGACGACGGCTCTACTGGCGGCGATCATCAAATCAAG 60 Query 61 aaacctaaggaagaagagaatcgaaacaagaaactgaaagaaaagGTTGTTAAAGTGTCG 120 |||||||| |||||||| |||||||||||||| |||||||||| | ||| | |||||| Sbjct 61 AAACCTAAAAAAGAAGAGGATCGAAACAAGAAATTGAAAGAAAA-G--GTTCAGGTGTCG 117 Query 121 CTACCGATTCCA-AACGAACTCATCTTACGTTGCTTCCTACTCGTTCGGAGATGTCACCA 179 ||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 CTACCAATTCCAGAA-GAACTCATCTTACGTTGCTTCCTACTCGTTCGGAGATGTCACCA 176 Query 180 CCCGTCGCTTTCCCTCGTCTGTAGTTCCTTCCATCGTCTCATGTCGAAGCTCTACGACGA 239 ||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| || Sbjct 177 CCCGTCGCTTTCCCTCGTCTGCAGATCCTTCCATAGTCTCATGTCGAAGCTCTACGATGA 236 Query 240 TCGCTTGCGTCTCGGCTACACAGAAAACGTTCTTTACGCCTACGTTGGATTCCCTCCTGT 299 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 237 TCGCTTGCGTCTCGGCTACACCGAAAACGTTCTTTACGCCTACGTTGGATTCCCTCCTGT 296 Query 300 TGAAAACCCTAGCTGGTACATTCTCCATCGGAAACCCTATCGATACTTGCCTAACACGAT 359 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 297 TGAAAACCCTAGCTGGTACATTCTCCATCGTAAACCCTATCGAAACTTGCCTAACACGAT 356 Query 360 TTCTTTAAAACTGTGCAAACTCGATTCCCTCCCTCCCATGCCTTGGAGATCTACTGTCGT 419 ||| || ||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 357 TTCGTTGAAATTGTGCAAAATCGATTCCCTCCCTCCCATGCCTTGGGGATCTACTGTCGT 416 Query 420 CACTATCGGATCGGATATCTATGTCATCGGTGGACGCGT 458 ||||||||||||||||||||||||||| ||||||||||| Sbjct 417 CACTATCGGATCGGATATCTATGTCATTGGTGGACGCGT 455 Score = 652 bits (353), Expect = 0.0 Identities = 495/562 (88%), Gaps = 16/562 (3%) Strand=Plus/Plus Query 626 AGAGTTGGAGTTCTGTGCCTGGTCCATACCCTAAAGCGTTTGAAAGAGAAGAGTTTCTGA 685 ||||||||||||||||||| ||||| |||||| ||||||||| ||||| ||||||||||| Sbjct 734 AGAGTTGGAGTTCTGTGCCAGGTCCGTACCCTGAAGCGTTTGGAAGAGGAGAGTTTCTGA 793 Query 686 CATATGCGGTGATGAAGGAGAAGATATACTGTTTGGATCTTTTTAGCAATGTTCATATTT 745 ||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||||||| Sbjct 794 CATATGCGGTGATGAAGGAGAAGATTTACTGTTTGGATCTTACTCGCAATATTCATATTT 853 Query 746 ATGATCCCAAGGAAAGTAAATGGGAGTCTTGGGTTTC-TGGAGCGTTGAGTTATTTTTGG 804 ||||||| |||||||||||||||||||||| || || |||| |||||||| || |||| Sbjct 854 ATGATCCTAAGGAAAGTAAATGGGAGTCTT-GGACTCATGGACCGTTGAGTGCTTCTTGG 912 Query 805 AATGATTCGTCTTGTGTGATTGATAATTTGCTGTTTTGCAAGAATACAAT-AGTGCGGTT 863 |||||||||||||||||| ||||||||||||||||||||| ||||| || |||| || Sbjct 913 AATGATTCGTCTTGTGTGGTTGATAATTTGCTGTTTTGCATCAATAC-ATCAGTGTATTT 971 Query 864 CCATGGATGGCGGCCAGTAAAAATATATGATCCAGAGCGGAAGGTTTGGTGTTT-CTTGG 922 || ||||| ||||| |||||||||||||||||||| |||| ||||| ||| |||| Sbjct 972 CCTTGGAT---GGCCAATAAAAATATATGATCCAGAGAAGAAGACTTGGT-TTTACTTGC 1027 Query 923 AAGGTTTACAAGGTTTTCCAG--AA-AATATCTTTCTCGATGAATGTAAAATGGCTAATT 979 ||||||||||||||||||||| || | ||||| | |||| || |||||||||||||| Sbjct 1028 AAGGTTTACAAGGTTTTCCAGCTAATGGTCTCTTTGTGGATGGATATAAAATGGCTAATT 1087 Query 980 TTGGTGGGAAGTTGCTGATTTTGGGCGCTGATGTG-AGCCGGATTAGGGGGAATGACGGT 1038 |||| ||||||||| |||||||| ||||||||||| | |||| ||||| || ||||| || Sbjct 1088 TTGGCGGGAAGTTGGTGATTTTGAGCGCTGATGTGCA-CCGGCTTAGGCGGTATGACTGT 1146 Query 1039 AGGAAAAGAGAGATTTGGTGCATAGAGATTGCTTGGGAAAGAAAGGAAAATGGTAGATTT 1098 |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 1147 AGGAAAAGAGAGATTTGGTGCATAGAGATTGCTTGGGAAAGAAAGGAAGATGGTACATTT 1206 Query 1099 TGGGGGAAGGTCGAATCAGTCGCGGTTGTGCTTACACCAACAAAGACGTCTTCTGTTGAT 1158 |||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||| Sbjct 1207 TGGGGGAAGGTCGAATCAGTGGCGGTTGTGCTTACACCAGCAAAGACGACTTCTGTTGA- 1265 Query 1159 CCCTTTGTAGAACTGTTACGGT 1180 | ||||| ||||||||||||| Sbjct 1266 CA-TTTGTGGAACTGTTACGGT 1286 Score = 132 bits (71), Expect = 9e-30 Identities = 83/89 (93%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 532 CACGAGTATCGCTCGCTCCCTAGTATGAAGGTGGCTCGCTGCCGTGCAGCCGCAGGTGTA 591 |||||||||||||| ||||| ||||||||| |||||||||| || |||||||| |||||| Sbjct 595 CACGAGTATCGCTCCCTCCCGAGTATGAAGATGGCTCGCTGTCGCGCAGCCGCGGGTGTA 654 Query 592 ATTGACGGAAAGATTTATGTGATCGGAGG 620 ||||||||||||||||||||||||||||| Sbjct 655 ATTGACGGAAAGATTTATGTGATCGGAGG 683 > AT2G29600.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr2:12655151-12657296 FORWARD LENGTH=2057 Length=2057 Score = 63.9 bits (34), Expect = 3e-09 Identities = 38/40 (95%), Gaps = 0/40 (0%) Strand=Plus/Plus Query 10 ATCTCTGAAACTTCCGACGACGGCTCTAATGGCGGCAATC 49 ||||||||||||||||||||||||||||| |||||| ||| Sbjct 520 ATCTCTGAAACTTCCGACGACGGCTCTAACGGCGGCGATC 559 > AT2G29800.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr2:12722939-12724602 REVERSE LENGTH=1565 Length=1565 Score = 62.1 bits (33), Expect = 1e-08 Identities = 35/36 (97%), Gaps = 0/36 (0%) Strand=Plus/Plus Query 10 ATCTCTGAAACTTCCGACGACGGCTCTAATGGCGGC 45 ||||||||||||||||||||||||||||| |||||| Sbjct 10 ATCTCTGAAACTTCCGACGACGGCTCTAACGGCGGC 45 > AT2G29780.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr2:12717786-12719328 REVERSE LENGTH=1467 Length=1467 Score = 56.5 bits (30), Expect = 6e-07 Identities = 54/65 (83%), Gaps = 3/65 (5%) Strand=Plus/Plus Query 1 ATGGTTTTAATCTCTGAAACTTCCGACGACGGCTCTAATGGCGGCAATCATCaaaaaaag 60 |||| | ||||||||||||||||||||||||||||| | || ||| | | |||| || | Sbjct 1 ATGGCTATAATCTCTGAAACTTCCGACGACGGCTCTCACGGTGGCG-T-ACCAAACAA-G 57 Query 61 aaacc 65 ||||| Sbjct 58 AAACC 62 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58031830020 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5