BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899444

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21725.1 | Symbols:  | Defensin-like (DEFL) family protein |...   387    4e-107
  AT3G30245.1 | Symbols:  | Encodes a defensin-like (DEFL) family...   313    6e-85 


> AT2G21725.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr2:9277659-9278072 FORWARD LENGTH=258
Length=258

 Score =  387 bits (209),  Expect = 4e-107
 Identities = 230/240 (96%), Gaps = 2/240 (1%)
 Strand=Plus/Plus

Query  1    ATGAAAAGCAAGAAATCTTCAGATGCTTATGGAACATATTTTCTTCTGATATCAACCATT  60
            ||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct  1    ATGAAAAGCGAGAAATCTGCAGATGCTTATGGAACATATTTTCTTCTAATATCAACCATT  60

Query  61   TTCTTGCTTTTCATCT-CACGACAAGCAAATTCGTACCAAATGCTCATATGTTTAGATCT  119
            |||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||
Sbjct  61   TTCTTGCTTTTCAT-TGCACGACAAGCAAGTTCGTACCAAATGCTCATATGTTTAGATCT  119

Query  120  AAATATATCATGTGCCGAGTGCAAAAAACAGTGCGACGAGACAAGTTATGGAGGAATATG  179
            |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct  120  AAATATATCATGTGCCGACTGCCAAAAACAGTGCGACGAGACAAGTTATGGAGGAATGTG  179

Query  180  TTTAAATGGAGGCAGAACTTGTTGTTGCaaaaaaaGTCCTCCACCATCATATTATGATCC  239
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  180  TTTAAATGGAGGCAGAACTTGTTGTTGCAAAAAAAGTCCTCCGCCATCATATTATGATCC  239


> AT3G30245.1 | Symbols:  | Encodes a defensin-like (DEFL) family 
protein. | chr3:11887094-11887485 FORWARD LENGTH=249
Length=249

 Score =  313 bits (169),  Expect = 6e-85
 Identities = 215/235 (91%), Gaps = 11/235 (5%)
 Strand=Plus/Plus

Query  1    ATGAAAAGCAAGAAATCTTCAGATGCTTATGGAACATATTTTCTTCTGATATCAACCATT  60
            ||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct  1    ATGAAAAGCGAGAAATCTGCAGATGCTTATGGAACATAATTTCTTCTGATATCAACCATT  60

Query  61   TTCTTGCTTTTCATCTCACGACAAGCAAATTCGTACCAAATGCTCATATGTTTAGATCTA  120
            |||||||||||||| |   | | | |   || ||| ||||||||||||||||||||| ||
Sbjct  61   TTCTTGCTTTTCAT-T---G-C-A-C---TTTGTATCAAATGCTCATATGTTTAGATTTA  110

Query  121  AATATATCATGTGCCGAGTGC-AAAAAACAGTGCGACGAGACAAGTTATGGAGGAATATG  179
            ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||
Sbjct  111  AATATATCATGTGCCGACTGCAAAAAAACAGTGCGACGAGACAAGTTATGGAGGAATGTG  170

Query  180  TTTAAATGGAGGCAGAACTTGTTGTTGCaaaaaaaGTCCTCCACCATCATATTAT  234
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  171  TTTAAATGGAGGCAGAACTTGTTGTTGCAAAAAAAGTCCTCCGCCATCATATTAT  225



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11762653266


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5