BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899499

Length=660
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G34040.1 | Symbols:  | Apoptosis inhibitory protein 5 (API5)...   231    5e-60


> AT2G34040.1 | Symbols:  | Apoptosis inhibitory protein 5 (API5) 
| chr2:14377734-14382494 REVERSE LENGTH=1992
Length=1992

 Score =  231 bits (125),  Expect = 5e-60
 Identities = 129/131 (98%), Gaps = 0/131 (0%)
 Strand=Plus/Plus

Query  317  TTTCAGATACAGACCATATTGACAGGTTGATATCATGCCTGCAACTGGCTCTTCCCTTTT  376
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  844  TTTCAGATACGGACCATATTGACAGGTTGATATCATGCCTGCAACTGGCTCTTCCCTTTT  903

Query  377  TTGCGAGAGGTGCTCCAAGCAGCAGGTTTCTTAACTATTTGAACAAACATATCATACCTG  436
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  904  TTGCGAGAGGTGCTCCAAGCAGCAGGTTTCTTATCTATTTGAACAAACATATCATACCTG  963

Query  437  TTTTTGACAAG  447
            |||||||||||
Sbjct  964  TTTTTGACAAG  974


 Score =  172 bits (93),  Expect = 3e-42
 Identities = 101/105 (96%), Gaps = 0/105 (0%)
 Strand=Plus/Plus

Query  556   GTTCCAAATGCTACAAACAGCTTGCGCGGGTACAAGATTGTGACCGGCCAACCATCAGAC  615
             |||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||
Sbjct  1176  GTTCCAAATGCTACAAACAGCTTGTGTGGGTACAAGATTGTGACCGGCCAGCCATCAGAC  1235

Query  616   AGATTGGGGGAGGACTTCTCAGAGTTGAACAAAGACTTCACTGAG  660
             |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  1236  AGATTGGGGGAGGACTTCTCAGAGTTGAACAAAGACTTTACTGAG  1280


 Score =  154 bits (83),  Expect = 1e-36
 Identities = 103/112 (92%), Gaps = 4/112 (4%)
 Strand=Plus/Plus

Query  446   AGGAAGCAAGGCAGCTGCTTCCTTCAATCGTTCAGCTTTTAAAGATATGCATGCCTGCCA  505
             |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
Sbjct  1042  AGGAAGCAAGGCAGCTGCTTCCTTCAATCGTTGAGCTTTTAAAGATATACATGCCTGCTA  1101

Query  506   GCCAGAAAGACTGGAAAGGAAATGAACTTCACATACGTGGAGTGTTTGTTGT  557
             |  | || ||||||| |||||||||||||||||||||| |||||||||||||
Sbjct  1102  G--A-AA-GACTGGAGAGGAAATGAACTTCACATACGTCGAGTGTTTGTTGT  1149


 Score =  115 bits (62),  Expect = 5e-25
 Identities = 71/75 (95%), Gaps = 2/75 (3%)
 Strand=Plus/Plus

Query  1    ATGTCAGTA-AACCAGGCCGAAGAAGTTCAGCAAATCGAGAAGCTCTATGAGTTCAGTGA  59
            ||||||| | |||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct  108  ATGTCAG-AGAACCAGTCCGAAGAAGTCCAGCAAATCGAGAAGCTCTATGAGTTCAGTGA  166

Query  60   GCGTCTCAATGCCTC  74
            |||||||||||||||
Sbjct  167  GCGTCTCAATGCCTC  181



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31898683345


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5