BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899500

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G33793.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   322    2e-87
  AT2G33796.1 | Symbols:  | FBD-like domain family protein | chr2...   313    1e-84
  AT5G25860.1 | Symbols:  | F-box/RNI-like superfamily protein | ...   274    6e-73


> AT2G33793.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:14296994-14300506 
FORWARD LENGTH=1401
Length=1401

 Score =  322 bits (174),  Expect = 2e-87
 Identities = 236/265 (89%), Gaps = 7/265 (3%)
 Strand=Plus/Minus

Query  226   TCTGCTTCTGTTAAGGGCTTGCACTGTGTAAGTAGTCAGGGACTCTGCATTGATCGAAAT  285
             ||| ||| ||| | |||||||||||||||||||| ||||||| ||| |||||||||||||
Sbjct  1157  TCT-CTT-TGTGATGGGCTTGCACTGTGTAAGTAATCAGGGAGTCTTCATTGATCGAAAT  1100

Query  286   GAAGTGAAGGTGTTGGAGATATATGGGTTTAGTGGACGTGATAGAGAGGTCAGACAAGTG  345
             |||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||
Sbjct  1099  GAAGTGAAGGTGTTGGAGATATATGGGTATAGAGGACGTGATAGAGAGCTCAGACAAGTG  1040

Query  346   ACGTGCTTTTTGAGGGAAATGCAGTTTCTTCAAGTGCTGAAAGTGGAAATTGATGCTC--  403
             |||||||||||| ||||||||| ||||||||||||| ||||||| ||||||||||||   
Sbjct  1039  ACGTGCTTTTTGCGGGAAATGCGGTTTCTTCAAGTGATGAAAGTCGAAATTGATGCTGAT  980

Query  404   G-TGATAACAACAAACTGCGACTCATCAATCACCTTCTTGCTCTGCCCGGACTTTCATCT  462
             | ||||||||| |||| || |||||| |||||||||||||||||||||  || |||||||
Sbjct  979   GATGATAACAAGAAACAGCAACTCATTAATCACCTTCTTGCTCTGCCCATACGTTCATCT  920

Query  463   AAATTACAAATC-ATGTTCTTGTGA  486
             || || |||||| | ||||||||||
Sbjct  919   AAGTTCCAAATCCA-GTTCTTGTGA  896


> AT2G33796.1 | Symbols:  | FBD-like domain family protein | chr2:14299709-14300252 
REVERSE LENGTH=330
Length=330

 Score =  313 bits (169),  Expect = 1e-84
 Identities = 222/247 (90%), Gaps = 5/247 (2%)
 Strand=Plus/Plus

Query  240  GGGCTTGCACTGTGTAAGTAGTCAGGGACTCTGCATTGATCGAAATGAAGTGAAGGTGTT  299
            |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct  3    GGGCTTGCACTGTGTAAGTAATCAGGGAGTCTTCATTGATCGAAATGAAGTGAAGGTGTT  62

Query  300  GGAGATATATGGGTTTAGTGGACGTGATAGAGAGGTCAGACAAGTGACGTGCTTTTTGAG  359
            |||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| |
Sbjct  63   GGAGATATATGGGTATAGAGGACGTGATAGAGAGCTCAGACAAGTGACGTGCTTTTTGCG  122

Query  360  GGAAATGCAGTTTCTTCAAGTGCTGAAAGTGGAAATTGATGCTC--G-TGATAACAACAA  416
            |||||||| ||||||||||||| ||||||| ||||||||||||   | ||||||||| ||
Sbjct  123  GGAAATGCGGTTTCTTCAAGTGATGAAAGTCGAAATTGATGCTGATGATGATAACAAGAA  182

Query  417  ACTGCGACTCATCAATCACCTTCTTGCTCTGCCCGGACTTTCATCTAAATTACAAATC-A  475
            || || |||||| |||||||||||||||||||||  || ||||||||| || |||||| |
Sbjct  183  ACAGCAACTCATTAATCACCTTCTTGCTCTGCCCATACGTTCATCTAAGTTCCAAATCCA  242

Query  476  TGTTCTT  482
             ||||||
Sbjct  243  -GTTCTT  248


> AT5G25860.1 | Symbols:  | F-box/RNI-like superfamily protein 
| chr5:9016908-9018424 REVERSE LENGTH=1347
Length=1347

 Score =  274 bits (148),  Expect = 6e-73
 Identities = 220/254 (87%), Gaps = 7/254 (3%)
 Strand=Plus/Plus

Query  238   AAGGGCTTGCACTGTGTAAGTAG-TCAGGGACTCTGCATTGATCGAAATGAAGTGAAGGT  296
             ||||| ||||| |||| |||| | ||| ||| | ||| ||||||||||||||||||||||
Sbjct  1096  AAGGGTTTGCATTGTGCAAGT-GATCACGGAGTTTGCGTTGATCGAAATGAAGTGAAGGT  1154

Query  297   GTTGGAGATATATGGGTTTAGTGGACGTGATAGAGAGGTCAGACAAGTGACGTGCTTTTT  356
             ||||||||||||||||||||||||| ||| |||||| || |||||||||| |||||| ||
Sbjct  1155  GTTGGAGATATATGGGTTTAGTGGATGTGGTAGAGAAGTGAGACAAGTGAAGTGCTTGTT  1214

Query  357   GAGGGAAATGCAGTTTCTTCAAGTGCTGAAAGTGGAAATTGATGCTC--G-TGATAACAA  413
             | ||||||||||||||||||||||| |||||||||||||||||||||  | |||||||||
Sbjct  1215  GCGGGAAATGCAGTTTCTTCAAGTGATGAAAGTGGAAATTGATGCTCATGATGATAACAA  1274

Query  414   CAAACTGCGACTCATCAATCACCTTCTTGCTCTGCCCGGACTTTCATCTAAATTACAAAT  473
              |||||| || |||||||||||||||||| ||| ||   || | |||||||||| || ||
Sbjct  1275  GAAACTGAGAGTCATCAATCACCTTCTTGATCTTCCTAAACGTCCATCTAAATTTCATAT  1334

Query  474   C-ATGTTCTTGTGA  486
             | | ||||||||||
Sbjct  1335  CCA-GTTCTTGTGA  1347



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23157941767


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5