BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899503
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34930.1 | Symbols: | disease resistance family protein / L... 699 0.0
> AT2G34930.1 | Symbols: | disease resistance family protein /
LRR family protein | chr2:14737066-14739904 REVERSE LENGTH=2839
Length=2839
Score = 699 bits (378), Expect = 0.0
Identities = 475/521 (91%), Gaps = 9/521 (2%)
Strand=Plus/Plus
Query 418 GGAATTGACATGTTTGAGAATAACTTATTAGACGCAATACCAGAGTCTCTCGGTATGTTA 477
||||||||| ||| |||||||||||||| || || ||||||||||||||| |||||||||
Sbjct 1945 GGAATTGACGTGTCTGAGAATAACTTATCAGGCGAAATACCAGAGTCTCTTGGTATGTTA 2004
Query 478 CCTTCTCTCAGTGTCTTGCTTCTGAACCAAAATGCGTTCGAAGGTGAAATCCAAGAGAGT 537
||||||||||| ||||||||||||||||||||| |||| |||||| |||||| |||||||
Sbjct 2005 CCTTCTCTCAGCGTCTTGCTTCTGAACCAAAATTCGTTGGAAGGTAAAATCCCAGAGAGT 2064
Query 538 CTTCAGAATTGCTCTAGCCTTACGAACATTGATTTTGGAGGAAACAAGCTGACTGGGAAG 597
|||| |||||| ||| ||||||||||||| ||| | ||||||||||||||||| ||||||
Sbjct 2065 CTTCGGAATTGTTCTGGCCTTACGAACATAGATCTCGGAGGAAACAAGCTGACCGGGAAG 2124
Query 598 CTTCCTTCATGGGTAGGAAAGCTGTCTTCTCTGTTCATGCTTCCTCTGCAAAGTAACTCC 657
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 2125 CTTCCTTCATGGGTAGGAAAGCTGTCTTCTCTATTCATGCTTCGTCTGCAAAGTAACTCC 2184
Query 658 TTCACTGGTGCAA-TCCCAGATGATCTCTGCAGCATTCCGAATCTACGCATTATGGACCT 716
||||||||| ||| |||||||||||||||||| | |||| |||||||||||| |||||||
Sbjct 2185 TTCACTGGT-CAAATCCCAGATGATCTCTGCAACGTTCCAAATCTACGCATTCTGGACCT 2243
Query 717 CTCTCG-AAACAAAATCTCGGGCC-TGATTCCAAAATGCATCAACAATCTCACAGCCCTT 774
||| || ||||||||||||||||| | |||||||||||||||| ||||||||||||| ||
Sbjct 2244 CTC-CGGAAACAAAATCTCGGGCCCT-ATTCCAAAATGCATCAGCAATCTCACAGCCATT 2301
Query 775 GCTCGAGGTACAAGCAATGAGGTGTTCCAGAATCTCGTATTCATTGTGACAAGAGCTCGT 834
||||||||||||| ||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 2302 GCTCGAGGTACAAACAATGAGGTGTTCCAGAATCTAGTCTTCATTGTGACCAGAGCTCGT 2361
Query 835 GAATACGAAGGCATAGCCAATAGCATAAA-CTTTTCAGGGAACAACATAAGCGGAGAGAT 893
|||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 2362 GAATACGAAGCCATAGCCAATAGCATAAATCTTT-CAGGGAACAACATAAGCGGAGAGAT 2420
Query 894 CCCAAGAGAAGTCTTGGGCCACTCATATCTC-GAATCTTGA 933
|||||||||| |||| |||| || |||||| ||||| |||
Sbjct 2421 CCCAAGAGAAATCTTAGGCCTCTTGTATCTCCGAATCCTGA 2461
Score = 608 bits (329), Expect = 3e-173
Identities = 391/421 (93%), Gaps = 4/421 (1%)
Strand=Plus/Plus
Query 1 ATGTGGCTTCAAGTGCAAACCAAGCTCAACTTTGTTACACTCAGAAACACTGGAATTGAA 60
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1486 ATGTGGCTCCAAGTACAAACCAAGCTCAACTTTGTCACACTCAGAAACACTGGTATTGAA 1545
Query 61 GATACAATACCCGATGGCTGGTTCGAAGGAATCGGTTCTGAAGTAACTTACCTGATTCTC 120
||||||||||| ||| |||||||| |||||| |||| |||| |||||||| |||||
Sbjct 1546 GATACAATACCGGATAGCTGGTTCTCTGGAATCTCTTCTAAAGTTACTTACCTAATTCT- 1604
Query 121 A-CAAACAACAGAATCAAAGGTAGATTACCTCAAAAGCTTGCGTTCCCAAAGTTAAACAC 179
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1605 AGCAAACAACAGAATCAAAGGTAGATTACCTCAAAAGCTTGCGTTCCCAAAGTTAAACAC 1664
Query 180 CATTGATTTGAGCTCCAACAACTTTGAAGGCCCTTTTCCTCTCTGGTCAACAAACGCAAC 239
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1665 CATTGATTTGAGCTCCAACAACTTTGAAGGCACTTTTCCTCTCTGGTCTACAAACGCAAC 1724
Query 240 AGAGCTGCGTCTTTATGAGAACAACTTCTCGGGTTCTCTTCCACTTAATATTGATGTCTT 299
||||||||||||||| |||||||||||||||||||||||||||| || ||||| |||||
Sbjct 1725 AGAGCTGCGTCTTTACGAGAACAACTTCTCGGGTTCTCTTCCACAAAACATTGACGTCTT 1784
Query 300 GATGCCAAGAATGCAGAAGATCTACCTCTTCCA-CAACAGCTTCACAGGCAACATCCCAT 358
||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1785 GATGCCAAGAATGGAGAAGATCTACCTCTTT-AGCAACAGCTTCACAGGCAACATCCCAT 1843
Query 359 CGTCTCTATGTGAAGTCTCCGGATTGCAAATTCTGTCTCTAAGGAAGAACCATTTCTCTG 418
||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||
Sbjct 1844 CGTCTCTATGTGAAGTCTCCGGACTGCAAATTCTGTCACTGAGGAAGAACCATTTCTCTG 1903
Query 419 G 419
|
Sbjct 1904 G 1904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45612605476
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5