BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899504
Length=204
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34930.1 | Symbols: | disease resistance family protein / L... 303 3e-82
> AT2G34930.1 | Symbols: | disease resistance family protein /
LRR family protein | chr2:14737066-14739904 REVERSE LENGTH=2839
Length=2839
Score = 303 bits (164), Expect = 3e-82
Identities = 191/204 (94%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 1 AACTGGGTCGCTTGGAGACGCTTGATCTATCAAGAAACAAAGTTTTCTGGAGCCATTCCT 60
||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| |||
Sbjct 2510 AACTGAGTCGCTTGGAGACGCTTGATCTATCAAAAAAC-AAGTTTTCTGGAGCCATACCT 2568
Query 61 CAGAGCTTGGCAGCAATATCTTCTCTACAAAGGCTGAATCTTTCGTTCAATAAACTGGAT 120
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2569 CAGAGCTTCGCAGCAATATCTTCTCTGCAAAGGCTGAATCTTTCGTTCAATAAACTGGAG 2628
Query 121 GAGAGCATACCTAAGCTTCTCAAATTTCAAGATCCAACCATTTACGTTGGAAATGAGTTA 180
| ||||||||||||||||||||| |||||||||||| |||||||| |||||||||| |||
Sbjct 2629 GGGAGCATACCTAAGCTTCTCAAGTTTCAAGATCCATCCATTTACATTGGAAATGAATTA 2688
Query 181 CTCTGTGGGAAACCATCTTCCTAA 204
||||||||||||||| ||||||||
Sbjct 2689 CTCTGTGGGAAACCA-CTTCCTAA 2711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9104544531
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5