BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899505

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G22145.1 | Symbols:  | ECA1 gametogenesis related family pro...   399    5e-111


> AT2G22145.1 | Symbols:  | ECA1 gametogenesis related family protein 
| chr2:9420320-9420589 FORWARD LENGTH=270
Length=270

 Score =  399 bits (216),  Expect = 5e-111
 Identities = 253/271 (93%), Gaps = 2/271 (1%)
 Strand=Plus/Plus

Query  1    ATGGTTCTTGttttttttATAACTTGGTCTTGTTCGAGTGCTCAACCGATTGATCCTAAC  60
            |||||||||| |||||| ||||||||||| ||||| |||||||||||||| |||||||||
Sbjct  1    ATGGTTCTTGCTTTTTTGATAACTTGGTCATGTTCTAGTGCTCAACCGATAGATCCTAAC  60

Query  61   GCATGTTGGCAGGCGATTAAACAGCCACCACATGAATGTCTCGAGAGCATAAAG-GGAAT  119
            |||||||||||| |||||||||| |||||||||||||||||||||||||||||| || ||
Sbjct  61   GCATGTTGGCAGACGATTAAACACCCACCACATGAATGTCTCGAGAGCATAAAGAGG-AT  119

Query  120  TGTACACGGACATGTCCATGAGATCAAGAAAGAATGTTGCGAAACCGTAAGTACAGTTTC  179
            | | |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct  120  TTTCCACGGACATGTCCATGGGATCAAGAAAGAATGTTGCGAAACCGTAAGTACAATTTC  179

Query  180  TGATTTGTGTTGGCCAATCATCTTCCCAAGCATGCCTTACATTCGTTTTCTATTGAAGGG  239
            |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct  180  TGATTTATGTTGGCCAATCATCTTCCCGAGCATGCCTTACATTCGCTTTCTATTGAAGGG  239

Query  240  TATTTGTACAGTCAAATACTCATTGCATTGA  270
            |||||| || |||||||||||||||||||||
Sbjct  240  TATTTGCACTGTCAAATACTCATTGCATTGA  270



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12365866254


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5