BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899510

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G27830.1 | Symbols: RPL12-A, RPL12 | ribosomal protein L12-A...   326    8e-89
  AT3G27850.1 | Symbols: RPL12-C | ribosomal protein L12-C | chr3...   324    3e-88


> AT3G27830.1 | Symbols: RPL12-A, RPL12 | ribosomal protein L12-A 
| chr3:10318505-10319432 FORWARD LENGTH=928
Length=928

 Score =  326 bits (176),  Expect = 8e-89
 Identities = 223/244 (91%), Gaps = 9/244 (4%)
 Strand=Plus/Minus

Query  8    CACCAGCTTCTTCAAGAGTCTTCTTAGCTTATTCAGCTTCATCTTTAGTCACACCTTCTT  67
            |||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||
Sbjct  627  CACCAGCTTCTTCAAGAGTCTTCTTAGCTTCTTCAGCTTCATCTTTAGTGATACCTTCTT  568

Query  68   TAAACTTCTTGGGTAATCCTTCAATTAGCTCACA-AGCTTCCTTCAACGCCAAGGTAGTC  126
            |||||||||| ||||||||||| |||||||| |  ||||||||||||||||||| |||||
Sbjct  567  TAAACTTCTTTGGTAATCCTTCGATTAGCTC-CTTAGCTTCCTTCAACGCCAAGCTAGTC  509

Query  127  AAAGCCCTAACAGCTTTAATCACAGCAATACGAGAACTACTTGGAACTTCATTGATAACC  186
            |||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct  508  AAAGCCCTAACAGCTTTAATTACTGCAATACGAGAACTACTCGGAACTTCATTGATAACC  449

Query  187  AGTAACCACATCGAATTCGGTTTGCTCCTCCACTACAGCCGCCGCGCCACCGTCGGCTGG  246
            |    | |  ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct  448  A----C-A--TCGAACTCTGTTTGCTCCTCCACTACAGCCGCCGCGCCACCGTCGGCTGG  396

Query  247  AGCA  250
            ||||
Sbjct  395  AGCA  392


> AT3G27850.1 | Symbols: RPL12-C | ribosomal protein L12-C | chr3:10324839-10325713 
FORWARD LENGTH=875
Length=875

 Score =  324 bits (175),  Expect = 3e-88
 Identities = 222/243 (91%), Gaps = 9/243 (4%)
 Strand=Plus/Minus

Query  8    CACCAGCTTCTTCAAGAGTCTTCTTAGCTTATTCAGCTTCATCTTTAGTCACACCTTCTT  67
            |||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||
Sbjct  610  CACCAGCTTCTTCAAGAGTCTTCTTAGCTTCTTCAGCTTCATCTTTAGTGATACCTTCTT  551

Query  68   TAAACTTCTTGGGTAATCCTTCAATTAGCTCACA-AGCTTCCTTCAACGCCAAGGTAGTC  126
            |||||||||| ||||||||||| |||||||| |  ||||||||||||||||||| |||||
Sbjct  550  TAAACTTCTTTGGTAATCCTTCGATTAGCTC-CTTAGCTTCCTTCAACGCCAAGCTAGTC  492

Query  127  AAAGCCCTAACAGCTTTAATCACAGCAATACGAGAACTACTTGGAACTTCATTGATAACC  186
            |||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct  491  AAAGCCCTAACAGCTTTAATTACTGCAATACGAGAACTACTCGGAACTTCATTGATAACC  432

Query  187  AGTAACCACATCGAATTCGGTTTGCTCCTCCACTACAGCCGCCGCGCCACCGTCGGCTGG  246
            |    | |  ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct  431  A----C-A--TCGAACTCTGTTTGCTCCTCCACTACAGCCGCCGCGCCACCGTCGGCTGG  379

Query  247  AGC  249
            |||
Sbjct  378  AGC  376



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11762653266


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5