BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899521
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22290.1 | Symbols: ATRABH1D, ATRAB-H1D, RAB-H1D, ATRAB6, RA... 1005 0.0
AT4G39890.1 | Symbols: AtRABH1c, RABH1c | RAB GTPase homolog H1... 501 3e-141
> AT2G22290.1 | Symbols: ATRABH1D, ATRAB-H1D, RAB-H1D, ATRAB6,
RABH1d | RAB GTPase homolog H1D | chr2:9466444-9467688 FORWARD
LENGTH=748
Length=748
Score = 1005 bits (544), Expect = 0.0
Identities = 596/622 (96%), Gaps = 0/622 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTCGGTGTCACCATTGGCAAAATATAAATTGGTGTTCCTAGGAGATCAATCTGTC 60
|||||||||||||||||||| || ||||||||| |||||||| |||||||||||||||||
Sbjct 125 ATGGCGTCGGTGTCACCATTAGCGAAATATAAACTGGTGTTCTTAGGAGATCAATCTGTC 184
Query 61 GGCAAAACCAGCATCATCACTCGTTTCATGTATGATAAGTTCGACACAACCTACCAGGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 GGCAAAACCAGCATCATCACTCGTTTCATGTATGATAAGTTCGACACAACCTACCAGGCT 244
Query 121 ACTATTGGAATAGACTTCTTATCTAAAACAATGTACCTTGAAGATCGCACTGTTCGTTTG 180
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||
Sbjct 245 ACTATTGGAATTGACTTCTTATCGAAAACAATGTACCTTGAAGATCGAACTGTTCGTCTG 304
Query 181 CAGCTATGGGATACTGCTGGACAAGAAAGATTCAGGAGTCTAATACCAAGTTACATCAGA 240
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 305 CAGCTATGGGATACAGCTGGACAAGAAAGATTCAGGAGTTTAATACCAAGTTACATAAGA 364
Query 241 GATTCTTCTGTTGCTGTTGTTGTTTATGATGTAGCCAATAGACTCTCATTTCTCAACACA 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 GATTCTTCTGTTGCAGTTGTTGTTTATGATGTAGCCAATAGACTCTCATTTCTCAACACA 424
Query 301 TCCAAGTGGATCGAAGAAGTCCGTACTGAAAGAGCTGGCGATGTTATCATTGTTCTTGTC 360
||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 425 TCCAAGTGGATAGAAGAAGTCCGTAATGAAAGAGCCGGCGATGTTATCATTGTTCTTGTC 484
Query 361 GGTAACAAGACTGATCTTGTCGAAAAAAGGCAAGTTTCTATTGAAGAAGGAGATAGCAAA 420
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 485 GGTAACAAGACTGATCTTGTCGAAAAACGGCAAGTTTCTATTGAGGAAGGAGATAGCAAA 544
Query 421 GGTCGTGAATATGGAGTTATGTTCATCGAGACAAGCGCGAAGGCAGGATTCAATATTAAG 480
||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 545 GGTCGTGAATACGGAGTTATGTTCATTGAGACGAGCGCGAAAGCAGGATTCAATATTAAG 604
Query 481 CCTTTGTTTCGCAAAATCGCTGCGGCTTTACCGGGAATGGAATCGTATTCAAACACTAAA 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 605 CCTTTGTTTCGCAAAATCGCTGCGGCATTACCGGGAATGGAATCGTATTCAAACACTAAA 664
Query 541 AATGAGGATATGGTTGACGTAAACCTGAAACCGACTTCGAATTCATCCCAAGGTGATCAA 600
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 665 AATGAGGATATGGTTGATGTAAACCTGAAACCAACTTCGAATTCATCCCAAGGTGATCAA 724
Query 601 CAAGGAGGAGGTTGTTCCTGTT 622
|||||||||| |||||| ||||
Sbjct 725 CAAGGAGGAGCTTGTTCATGTT 746
> AT4G39890.1 | Symbols: AtRABH1c, RABH1c | RAB GTPase homolog
H1C | chr4:18505962-18507586 FORWARD LENGTH=922
Length=922
Score = 501 bits (271), Expect = 3e-141
Identities = 508/622 (82%), Gaps = 18/622 (3%)
Strand=Plus/Plus
Query 1 ATGGCGTCGGTGTCACCATTGGCAAAATATAAATTGGTGTTCCTAGGAGATCAATCTGTC 60
||||| ||||| ||||| |||||||| | |||| |||||||| ||||||| |||||||||
Sbjct 151 ATGGCTTCGGTTTCACCTTTGGCAAAGTTTAAACTGGTGTTCTTAGGAGACCAATCTGTC 210
Query 61 GGCAAAACCAGCATCATCACTCGTTTCATGTATGATAAGTTCGACACAACCTACCAGGCT 120
|| |||||||||||||||||||||||||||||||| || |||||||| || |||||| ||
Sbjct 211 GGAAAAACCAGCATCATCACTCGTTTCATGTATGACAAATTCGACACCACGTACCAGCCT 270
Query 121 ACTATTGGAATAGACTTCT-TATCTAAAACAATGTACCTTGAAGATCGCACTGTTCGTTT 179
|| |||||||| || || | |||| |||||||||||||| |||||||| || ||||||||
Sbjct 271 ACCATTGGAATCGA-TTTTCTATCGAAAACAATGTACCTCGAAGATCGAACAGTTCGTTT 329
Query 180 GCAGCTATGGGATACTGCTGGACAAGAAAGATTCAGGAGTCTAATACCAAGTTACATCAG 239
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 330 GCAGCTATGGGATACTGCTGGACAAGAAAGATTCAGGAGTCTAATCCCAAGTTACATCAG 389
Query 240 AGATTCTTCTGTTGCTGTTGTTGTTTATGATGTAGCCAATAGACTCTCATTTCTCAACAC 299
||||||||||||||| ||||||| || |||||| ||||||| | | ||||| || ||
Sbjct 390 AGATTCTTCTGTTGCCATTGTTGTATACGATGTATCCAATAGGCAAACGTTTCTGAATAC 449
Query 300 ATCCAAGTGGATCGAAGAAGTCCGTACTGAAAGAGCTG---GCGATGTTATCATTGTTCT 356
|| || ||||| || || || | | ||||||| | || |||||||||| |||||
Sbjct 450 CTCGAAATGGATTGAGGATGTTCACAGAGAAAGAGGTCAAAGCAATGTTATCATCGTTCT 509
Query 357 TGTCGGTAACAAGACTGATCTTGTCGAAAAAAGGCAAGTTTCTATT-GAAGAAGGAGATA 415
||| || ||||| ||||||||||| |||||| ||||||| || || | |||||||| |
Sbjct 510 TGTTGGAAACAAAACTGATCTTGTTGAAAAACGGCAAGTATCAATCAGT-GAAGGAGA-A 567
Query 416 G-CAAAGGTCGTGAATATGGAGTTATGTTCATCGAGACAAGCGCGAAGGCAGGA-TTCAA 473
| ||| ||| || |||||||| |||||||| ||||| || || || | | | |||||
Sbjct 568 GACAAGGGTAAAGAGTATGGAGTGATGTTCATTGAGACCAGTGCCAAAGAAA-ACTTCAA 626
Query 474 TATTAAGCCTTTGTTTCGCAAAATCGCTGCGGCTTTACC-GGGAATGGAATCGTATTCAA 532
|||||| ||||||| || || || ||||| |||||||| ||| | || || ||||||
Sbjct 627 CATTAAGGCTTTGTTCCGGAAGATTGCTGCAGCTTTACCCGGGG-TAGACTCATATTCAT 685
Query 533 ACACTA-AAAATGAG--GATATGGTTGACGTAAACCTGAA-ACCGACTTCGAATTCATCC 588
| | ||||| || || |||||||| || || || || ||| ||||| ||||||||
Sbjct 686 TGGCAACAAAATCAGATGACATGGTTGATGTGAATCTAAAGACC-ACTTCAAATTCATCA 744
Query 589 CAAGGTGATCAACAAGGAGGAG 610
|||||||| |||||||||||||
Sbjct 745 CAAGGTGAGCAACAAGGAGGAG 766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30090254053
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5