BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899564

Length=1014
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G11851.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   294    9e-79


> AT2G11851.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:4785982-4790030 
FORWARD LENGTH=1373
Length=1373

 Score =  294 bits (159),  Expect = 9e-79
 Identities = 262/309 (85%), Gaps = 17/309 (6%)
 Strand=Plus/Plus

Query  308  CGCGTTACGTCCATGAAGATGGCTCGAAGCGGAGCATCGGCAAGCTTGATAGACAAG-AA  366
            ||| ||||  |||||||||||||| ||||| |||||||| |||||||| |||||  | ||
Sbjct  596  CGCCTTACCCCCATGAAGATGGCTTGAAGCCGAGCATCGACAAGCTTGGTAGAC-GGCAA  654

Query  367  GAAGATAT-CGTGTTTGGAGGGTGCTGGG-A---TGTCGCTGATTCCTCAAACTGGGTAG  421
            |||||||| |||||||||| ||| ||||| |   ||| ||||||||||||||||| ||||
Sbjct  655  GAAGATATACGTGTTTGGAAGGTACTGGGAATGTTGTTGCTGATTCCTCAAACTGTGTAG  714

Query  422  AGGTATTTGATATGGAAACCGGAACTTGGGACTTGTTGTTTGTGTTTACGCCCAAGATGC  481
            |||| |||||||| |||||| |||||||||||||||||| |||||| |||||||||||||
Sbjct  715  AGGTTTTTGATAT-GAAACCCGAACTTGGGACTTGTTGTCTGTGTTAACGCCCAAGATGC  773

Query  482  CCCTCAAAATCCAACAAAG-TGTGG-CGT---TAGACGACAAGAATGTTTACGCGGTGGA  536
            ||| ||||||||||| | | |||||  ||   || |||||| | ||||| ||||||||||
Sbjct  774  CCCACAAAATCCAAC-ATGATGTGGTGGTACATA-ACGACACGTATGTTCACGCGGTGGA  831

Query  537  TGAGGATGGTCAAATCTTTTCCTTCTCACCAAGTAATTGTATGTTTGTGACAAGGGGAAT  596
            |||||||||||||||||||| ||||||| |||||  |||| | ||||||||||  ||| |
Sbjct  832  TGAGGATGGTCAAATCTTTTTCTTCTCAACAAGTTGTTGTTTCTTTGTGACAACCGGA-T  890

Query  597  -AAAAGAGT  604
             ||||||||
Sbjct  891  CAAAAGAGT  899



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 49681571383


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5