BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899581
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22830.1 | Symbols: SQE2 | squalene epoxidase 2 | chr2:97236... 2302 0.0
AT4G37760.1 | Symbols: SQE3 | squalene epoxidase 3 | chr4:17743... 1044 0.0
> AT2G22830.1 | Symbols: SQE2 | squalene epoxidase 2 | chr2:9723680-9726270
REVERSE LENGTH=2025
Length=2025
Score = 2302 bits (1246), Expect = 0.0
Identities = 1396/1470 (95%), Gaps = 4/1470 (0%)
Strand=Plus/Plus
Query 211 AATAAGAAGAATCGTGGACTCGTCGTTTCCCTAAACGACACCGTATCGAATATTCTTGCG 270
||||||||||||||||||||||||||||||| |||||| |||||||| || | |||||
Sbjct 289 AATAAGAAGAATCGTGGACTCGTCGTTTCCCAAAACGATACCGTATCCAAAAATCTTGAA 348
Query 271 ACGGAGGCTGATTCCGTCACCGATGTTATCATCGTCGGAGCTGGTGTTTCCGGTGCCGCT 330
||||||| |||||| | ||| ||||| |||||||||||||||||||| ||||| |||||
Sbjct 349 ACGGAGGTTGATTCTGGCACTGATGTGATCATCGTCGGAGCTGGTGTCGCCGGTTCCGCT 408
Query 331 CTTGCTCATACTCTCGGCAAGGAAGGACGAAGAGTTCATGTTATAGAAAGAGATTTGTCT 390
||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| |||
Sbjct 409 CTTGCTCATACTCTCGGCAAGGAAGGAAGAAGAGTGCACGTTATAGAAAGAGATTTTTCT 468
Query 391 GAGCAAGACAGAATTGTTGGTGAATTGCTTCAACCTGGTGGTTACTTGAAGTTAATCGAA 450
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 469 GAGCAAGACAGAATCGTTGGTGAATTGCTTCAACCTGGTGGTTATTTGAAGTTAATAGAA 528
Query 451 CTTGGACTTGAGGATTGTGTGAAGAAGATAGATGCTCAACGAGTTCTTGGTTATGTTCTC 510
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 529 CTTGGACTTGAAGATTGTGTGAAGAAGATTGATGCTCAACGAGTTCTTGGTTATGTTCTC 588
Query 511 TTTAAAGATGGGAAACATACTAAACTTTCTTACCCTTTGGAAACGTTTGATTCGGATGTA 570
|||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 589 TTTAAAGATGGGAAGCATACTAAACTTGCTTACCCCTTGGAAACGTTTGATTCGGATGTA 648
Query 571 GCCGGGAGAAGTTTCCACAATGGGAGATTTGTGCAGAGAATGCGAGAAAAAGCCGC-TAC 629
||||||||||||||||| |||||||||||||| ||||||||||||||||||||| | |||
Sbjct 649 GCCGGGAGAAGTTTCCATAATGGGAGATTTGTACAGAGAATGCGAGAAAAAGCC-CTTAC 707
Query 630 TCTTTCAAATGTACGATTGGAACAAGGAACGGTTACGTCGTTGCTTGAAGAAAACGGGAC 689
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 708 TCTTTCAAATGTACGATTGGAACAAGGAACGGTTACGTCGTTGCTTGAAGAACACGGGAC 767
Query 690 AATCAAAGGGGTTCGATACAGGACAAAGGAGGGCAATGAGCTTAGATCATTTGCTCCTCT 749
||| ||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||
Sbjct 768 AATTAAAGGGGTTCGATACAGAACAAAAGAGGGCAATGAGTTTAGATCATTTGCTCCTCT 827
Query 750 CACAATTGTATGTGATGGTTGTTTCTCCAACTTGCGTCGCTCTCTTTGTAAACCTAAGGT 809
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 828 CACAATTGTATGTGATGGTTGTTTCTCCAACTTGCGTCGCTCTCTTTGCAAACCTAAGGT 887
Query 810 GGATAG-GCCATCTACTTTTGTGGGTCTTGTCTTGGAGAACTGTGAACTTCCATTTGCAA 868
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 GGAT-GTGCCATCTACTTTTGTGGGTCTTGTCTTGGAGAACTGTGAACTTCCATTTGCAA 946
Query 869 ATCACGGGCATGTTGTTCTCGCTGACCCATCTCCCATCTTAATGTATCCCATCAGCAGTT 928
|||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 947 ATCACGGGCACGTTGTTCTCGGTGACCCATCACCCATCTTAATGTATCCCATCAGCAGTT 1006
Query 929 CTGAAGTCCGTTGCTTAGTCGATGTACCGGGTCAAAAAGTTCCTCCCATTGGAAATGGCG 988
||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| |
Sbjct 1007 CTGAAGTCCGTTGCTTAGTAGATGTACCGGGTCAAAAACTTCCTCCCATTGCAAATGGTG 1066
Query 989 AAATGGCAAAGTATCTGAAAACACGGGTTGCGCCTCAAGTACCAACCGAGGTCCGTGAAG 1048
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1067 AAATGGCAAAGTATCTGAAAACACGGGTTGCGCCTCAAGTACCAACCAAGGTCCGTGAAG 1126
Query 1049 CATTCATCACCGCGGTTGAGAAAGGTAATATCAAAACCATGCCAAACCGAAGCATGCCAG 1108
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1127 CATTCATCACCGCTGTTGAGAAAGGTAATATCAGAACCATGCCAAACCGAAGCATGCCAG 1186
Query 1109 CTGATCCGATTCCTACTCCTGGAGCTCTTCTTCTAGGTGATGCATTCAACATGAGACATC 1168
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1187 CTGATCCGATTCCTACTCCTGGAGCTCTTCTTCTTGGTGATGCATTCAACATGAGACATC 1246
Query 1169 CTTTAACTGGTGGTGGGATGACCGTTGCATTGGCGGATATCGTTGTACTCCGTGATCTTC 1228
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1247 CTTTAACCGGTGGTGGGATGACCGTTGCATTGGCGGATATAGTTGTACTCCGTGATCTTC 1306
Query 1229 TAACGCCAATTCGCAACCTTAATGACAAAGAAGCTTTGTCTAAGTATATTGAATCTTTTT 1288
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1307 TAAGGCCAATTCGCAACCTTAATGACAAAGAAGCTTTGTCTAAGTATATTGAATCCTTTT 1366
Query 1289 ACACACTGCGAAAACCTGTAGCTTCCACCATTAATACGCTGGCGGACGCGTTGTATATGG 1348
||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||| ||
Sbjct 1367 ACACACTACGAAAACCTGTAGCTTCCACCATTAATACATTGGCGGATGCGTTGTATAAGG 1426
Query 1349 TCTTTTTAGCATCTTCGGATGAAGCAAGAACGGAAATGCGTGAAGCTTGCTTCAACTATC 1408
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1427 TCTTTTTAGCATCTTCAGATGAAGCAAGAACGGAAATGCGTGAAGCTTGCTTCGACTATC 1486
Query 1409 TTAGCCTTGGAGGTGTTTGCTCATCTGGTCCAGTTGCATTGCTATCTGGTTTAAACCCTC 1468
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1487 TTAGCCTTGGAGGTGTTTTCTCATCTGGTCCAGTTGCATTGCTCTCTGGTTTAAACCCTC 1546
Query 1469 GTCCTCTGAGTTTAGTTCTCCACTTCTTTGCTGTGGCGATCTACGCTGTTTGTCGTTTAA 1528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 GTCCTCTGAGTTTAGTTCTCCACTTCTTTGCTGTGGCGATCTACGCTGTTTGTCGTTTAA 1606
Query 1529 TGCTACCATTTCCTTCGATTAAAAGCTTTTGGCTTGGAGCTAGGATAATCTCGAGTGCTA 1588
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1607 TGCTACCATTTCCTTCGATTGAGAGCTTTTGGCTTGGAGCTAGGATAATCTCGAGTGCTT 1666
Query 1589 CAAGCATCATCTTTCCCATAATCAAAGCTGAGGGAGTTAGGCAAATGTTCTTCCCGCGTA 1648
|||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||| ||||
Sbjct 1667 CAAGCATCATCTTTCCAATAATTAAAGCAGAGGGAGTTAGACAAATGTTCTTCCCTCGTA 1726
Query 1649 CTATCGCTGCCATATACCGTACTCCTCCTT 1678
| ||| |||||||||||||| |||||||||
Sbjct 1727 CAATCCCTGCCATATACCGTGCTCCTCCTT 1756
Score = 265 bits (143), Expect = 1e-69
Identities = 174/189 (92%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 1 ATGAAATTATTCGTAATCAAGAACCTTCCAAGATTTCAATTAACTCTTAGATCTTTGCTT 60
|||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 1 ATGAAACCATTCGTAATCAGGAACCTTCCAAGATTTCAATCAACTCTTAGATCTTCGCTT 60
Query 61 CTCTACACAAATCATCGTCCCTCTTCTCGATTCTCTCTCTCTACTCGTCGATTAACCACC 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CTCTACACAAATCATCGCCCCTCTTCTCGATTCTCTCTCTCTACTCGTCGATTCACCACC 120
Query 121 GGAGCCACCTACATTCGCCGCGGGAAAGCAACGGCGGAGCAGAGACACAAA-TGCGCCGC 179
|||||||||||||||||||| ||||||||||||||| ||||| || |||| | | ||||
Sbjct 121 GGAGCCACCTACATTCGCCGATGGAAAGCAACGGCGGCGCAGACACTCAAACT-CTCCGC 179
Query 180 CGTGAACTC 188
|||||||||
Sbjct 180 CGTGAACTC 188
> AT4G37760.1 | Symbols: SQE3 | squalene epoxidase 3 | chr4:17743887-17746678
FORWARD LENGTH=2028
Length=2028
Score = 1044 bits (565), Expect = 0.0
Identities = 1148/1423 (81%), Gaps = 66/1423 (5%)
Strand=Plus/Plus
Query 292 GATGTTATCATCGTCGGAGCTGGTGTTTCCGGTGCCGCTCTTGCTCATACTCTCGGCAAG 351
||| ||||||| ||||| |||||||| |||| || || ||||||||||| |||||||||
Sbjct 364 GATATTATCATTGTCGGTGCTGGTGTCGCCGGCGCTGCCCTTGCTCATACCCTCGGCAAG 423
Query 352 GAAGGACGAAGAGTTCATGTTATAGAAAGAGATTTGTCTGAGCAAGA-CAGAATTGTTGG 410
|||||| |||||||||| |||||||||||||| || | |||| || | ||||||| ||
Sbjct 424 GAAGGAAGAAGAGTTCACGTTATAGAAAGAGACTTAACGGAGCCTGATC-GAATTGTCGG 482
Query 411 TGAATTGCTTCAACCTGGTGGTTACTTGAAGTTAATCGAACTTGGACTTGAGGATTGTGT 470
|||||| ||||| ||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 483 TGAATTACTTCAGCCTGGTGGTTACTTGAAGTTAATCGAACTCGGGCTTGAAGATTGTGT 542
Query 471 GAAGAAGATAGATGCTCA-ACGAGTTCTTGGTTATGTTCTCTTTAAAGATGGGAAACATA 529
|||| | |||||||| || | ||||||||||||||| ||||||||||||||||||||| |
Sbjct 543 GAAGGATATAGATGCGCAGA-GAGTTCTTGGTTATGCTCTCTTTAAAGATGGGAAACACA 601
Query 530 CTAAACTTTCTTACCCTTTGGAAAC-GTTTGATTCGGATGTAGCCGGG-AGAAG-TTTCC 586
||||||| |||||||| |||| | | ||||||||| ||||| | |||| | || ||| |
Sbjct 602 CTAAACTCTCTTACCCGTTGG-ATCAGTTTGATTCCGATGTTG-CGGGTCGTAGCTTT-C 658
Query 587 ACAATGGGAGATTTGTGCAGAGAATGCGAGAAAAAGCCGCTACT-CTTTCAAATGTACGA 645
|||||||||||||||||||||| |||||||| ||||| || | ||| | ||||| |||
Sbjct 659 ACAATGGGAGATTTGTGCAGAGGATGCGAGAGAAAGCTTCT-TTACTTCCCAATGTTCGA 717
Query 646 TTGGAACAAGGAACGGTTACGTCGTTGCTTGAAGAAAACGGGACAATCAAAGGGGTTCGA 705
|||| |||||||| || || |||||| | ||||||||||| | ||||||||| |||| |
Sbjct 718 ATGGAGCAAGGAACAGTGACATCGTTGGTGGAAGAAAACGGAATAATCAAAGGTGTTCAA 777
Query 706 TACAGGA-CAAAGGA-GGGCAATGAGCTT-AGATCATTTGCTCCTCTCACAATTGTATGT 762
|||| | |||| || || ||| |||||| || ||||||||||||||||| |||||||||
Sbjct 778 TACAAAACCAAA-GATGGCCAA-GAGCTTAAG-TCATTTGCTCCTCTCACTATTGTATGT 834
Query 763 GATGGTTGTTTCTCCAACTTGCGTCGCTCTCTTTGTAAACCTAAGGTGGATAG-GCCATC 821
|||||||||||||||||||||||||| ||||| || |||||||||||||| | ||||||
Sbjct 835 GATGGTTGTTTCTCCAACTTGCGTCGATCTCTCTGCAAACCTAAGGTGGAG-GTGCCATC 893
Query 822 TACTTTTGTGGGTCTTGTCTTGGAGAACTGTGAACTTCCATTTGCAAATCACGGGCATGT 881
| ||| || ||||| || |||||||| || ||||| || ||| | || |||||||| ||
Sbjct 894 CAATTTCGTTGGTCTGGTATTGGAGAATTGCGAACTCCCGTTTCCGAACCACGGGCACGT 953
Query 882 TGTTCTCG-CTGACCCATCTCCCATCTTAATGTATCCCATCAGCAGTTCTGAAGTCCGTT 940
|||||| | | || || || ||||| ||| | ||||| |||||||| || ||||||||||
Sbjct 954 TGTTCTTGGC-GATCCGTCACCCATTTTATTCTATCCTATCAGCAGCTCGGAAGTCCGTT 1012
Query 941 GCTTAGTCGATGTACCGGGT-CAAAAAGTTCCTCCCA-TTGGAAATGGCGAAATGGCAAA 998
|||| || |||||||| ||| ||||| ||||| | | ||| || ||| |||||||| |
Sbjct 1013 GCTTGGTAGATGTACCAGGTTCAAAAC-TTCCTTC-AGTTGCAAGTGGTGAAATGGCTCA 1070
Query 999 GTATCTGAAAACACGGGTTGCGCCTCAAGTACCAAC-CGAGGTCCGTGAAGCATTCATCA 1057
|||| |||||| |||||| || || |||||| | | || ||||||| || |||||
Sbjct 1071 CCATCTCAAAACAATGGTTGCACCGCAGGTACCACCTC-AGATCCGTGATGCTTTCATTT 1129
Query 1058 CCGCGGTTGAGAAAGGTAATATCAA-AACCATGCCAAACCGAAGCATGCCAGCTGATCCG 1116
| || || || |||||||| || || ||| ||||| ||| |||||||||||||||||||
Sbjct 1130 CTGCAGTCGAAAAAGGTAACAT-AAGAACAATGCCGAACAGAAGCATGCCAGCTGATCCA 1188
Query 1117 ATTCCTACTCCTGGAGCTCTT-CTTCTAGGTGATGCATTCAACATGAGACATCCT-TTAA 1174
|||| ||| ||||||||| || ||| |||||||||| ||||||||| | |||||| |||
Sbjct 1189 ATTCATACACCTGGAGCT-TTGCTTTTAGGTGATGCGTTCAACATGCGCCATCCTCTTA- 1246
Query 1175 CTGGTGGTGGGATGACCGTTGCATTGGCGGATATCGTTGTACTCCGTGATCT-TCT-AAC 1232
|||| ||||| ||||||||||||||| | ||||| || | ||||||||||| | | |||
Sbjct 1247 CTGGAGGTGGTATGACCGTTGCATTGTCTGATATAGTCATCCTCCGTGATCTAT-TGAAC 1305
Query 1233 GCCAATTCG-CAACCTTAATGA-CAAAGAAG-CTTTGTCTAAGTATATTGAATCTTTTTA 1289
|| | || | || |||| | |||||| | | || || || || || ||||| || ||
Sbjct 1306 -CCGCT-CGTCGAC-TTAACCAACAAAGA-GTCCTTATCCAAATACATAGAATCATTCTA 1361
Query 1290 CACACTGCGAAAACCTGTAGCTTCCACCATTAATACGCTGGC-GGACGCG-TTGTATATG 1347
|||| |||| ||||| || ||||| || || ||||| || || || ||| || || |
Sbjct 1362 CACATTGCGGAAACCGGTTGCTTCGACTATCAATACACTCGCAGG-CGCTCTT-TACAAA 1419
Query 1348 GTCTTTTTAGCATCTTCGGATGAAGCAAGAA-CGGAAATGCGT-GAAGCTTGCTTCAACT 1405
||||||||||||||| | || || ||||||| || |||||||| || ||||||||| | |
Sbjct 1420 GTCTTTTTAGCATCTCCAGACGATGCAAGAAGCG-AAATGCGTCGA-GCTTGCTTCGATT 1477
Query 1406 ATCTTAGCCTTGGAGGTGTTTGCTCATCTGGTCCAGTTGCATTGCTATCTGGTTTAAACC 1465
|||||||||| ||||| ||||||||||| || || || || |||||||||||||| ||||
Sbjct 1478 ATCTTAGCCTCGGAGGGGTTTGCTCATCAGGACCTGTGGCTTTGCTATCTGGTTTGAACC 1537
Query 1466 CTCGTCCTCTGAGT-TTAGTTCTCCACTTCTTTGCTGTGGCGATCTACGCTGTTTGTCGT 1524
| || ||| |||| || ||||| || ||||| || || ||||| | || ||| |||||
Sbjct 1538 CACGACCTATGAGCCTT-GTTCTTCATTTCTTCGCAGTTGCGATTTTCGGGGTTGGTCGT 1596
Query 1525 TTAAT-GCTACCATTTCCT-TC-GATTAAAAGCTTTTGGCTTGGAGCTAGGA-TAATCTC 1580
|| | | |||| | ||| || | ||||| | || |||||||||||||| | |||||||
Sbjct 1597 TTGCTTG-TACC-TCTCCCGTCCG-TTAAACGGTTATGGCTTGGAGCTAG-ACTAATCTC 1652
Query 1581 GAGTGCTACAAGCATCATCTTTCCCATAATCAAAGCTGAGGGAGTTAGGCAAATGTTCTT 1640
||||||| || | ||||| ||||| ||||| ||||| || || || ||||||||||||||
Sbjct 1653 GAGTGCTTCAGGGATCATATTTCCAATAATAAAAGCAGAAGGTGTGAGGCAAATGTTCTT 1712
Query 1641 CCCGCGTACTAT-CGCTGCCATATACCGTA-CTCCTCCTTCTC 1681
||| || ||||| | ||||||| ||| | | |||||||| |||
Sbjct 1713 CCCTCGAACTATTC-CTGCCATTTACAG-AGCTCCTCCTACTC 1753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83332904700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5