BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg899581 Length=1686 Score E Sequences producing significant alignments: (Bits) Value AT2G22830.1 | Symbols: SQE2 | squalene epoxidase 2 | chr2:97236... 2302 0.0 AT4G37760.1 | Symbols: SQE3 | squalene epoxidase 3 | chr4:17743... 1044 0.0 > AT2G22830.1 | Symbols: SQE2 | squalene epoxidase 2 | chr2:9723680-9726270 REVERSE LENGTH=2025 Length=2025 Score = 2302 bits (1246), Expect = 0.0 Identities = 1396/1470 (95%), Gaps = 4/1470 (0%) Strand=Plus/Plus Query 211 AATAAGAAGAATCGTGGACTCGTCGTTTCCCTAAACGACACCGTATCGAATATTCTTGCG 270 ||||||||||||||||||||||||||||||| |||||| |||||||| || | ||||| Sbjct 289 AATAAGAAGAATCGTGGACTCGTCGTTTCCCAAAACGATACCGTATCCAAAAATCTTGAA 348 Query 271 ACGGAGGCTGATTCCGTCACCGATGTTATCATCGTCGGAGCTGGTGTTTCCGGTGCCGCT 330 ||||||| |||||| | ||| ||||| |||||||||||||||||||| ||||| ||||| Sbjct 349 ACGGAGGTTGATTCTGGCACTGATGTGATCATCGTCGGAGCTGGTGTCGCCGGTTCCGCT 408 Query 331 CTTGCTCATACTCTCGGCAAGGAAGGACGAAGAGTTCATGTTATAGAAAGAGATTTGTCT 390 ||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| ||| Sbjct 409 CTTGCTCATACTCTCGGCAAGGAAGGAAGAAGAGTGCACGTTATAGAAAGAGATTTTTCT 468 Query 391 GAGCAAGACAGAATTGTTGGTGAATTGCTTCAACCTGGTGGTTACTTGAAGTTAATCGAA 450 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 469 GAGCAAGACAGAATCGTTGGTGAATTGCTTCAACCTGGTGGTTATTTGAAGTTAATAGAA 528 Query 451 CTTGGACTTGAGGATTGTGTGAAGAAGATAGATGCTCAACGAGTTCTTGGTTATGTTCTC 510 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 529 CTTGGACTTGAAGATTGTGTGAAGAAGATTGATGCTCAACGAGTTCTTGGTTATGTTCTC 588 Query 511 TTTAAAGATGGGAAACATACTAAACTTTCTTACCCTTTGGAAACGTTTGATTCGGATGTA 570 |||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||| Sbjct 589 TTTAAAGATGGGAAGCATACTAAACTTGCTTACCCCTTGGAAACGTTTGATTCGGATGTA 648 Query 571 GCCGGGAGAAGTTTCCACAATGGGAGATTTGTGCAGAGAATGCGAGAAAAAGCCGC-TAC 629 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| | ||| Sbjct 649 GCCGGGAGAAGTTTCCATAATGGGAGATTTGTACAGAGAATGCGAGAAAAAGCC-CTTAC 707 Query 630 TCTTTCAAATGTACGATTGGAACAAGGAACGGTTACGTCGTTGCTTGAAGAAAACGGGAC 689 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 708 TCTTTCAAATGTACGATTGGAACAAGGAACGGTTACGTCGTTGCTTGAAGAACACGGGAC 767 Query 690 AATCAAAGGGGTTCGATACAGGACAAAGGAGGGCAATGAGCTTAGATCATTTGCTCCTCT 749 ||| ||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| Sbjct 768 AATTAAAGGGGTTCGATACAGAACAAAAGAGGGCAATGAGTTTAGATCATTTGCTCCTCT 827 Query 750 CACAATTGTATGTGATGGTTGTTTCTCCAACTTGCGTCGCTCTCTTTGTAAACCTAAGGT 809 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 828 CACAATTGTATGTGATGGTTGTTTCTCCAACTTGCGTCGCTCTCTTTGCAAACCTAAGGT 887 Query 810 GGATAG-GCCATCTACTTTTGTGGGTCTTGTCTTGGAGAACTGTGAACTTCCATTTGCAA 868 |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 888 GGAT-GTGCCATCTACTTTTGTGGGTCTTGTCTTGGAGAACTGTGAACTTCCATTTGCAA 946 Query 869 ATCACGGGCATGTTGTTCTCGCTGACCCATCTCCCATCTTAATGTATCCCATCAGCAGTT 928 |||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 947 ATCACGGGCACGTTGTTCTCGGTGACCCATCACCCATCTTAATGTATCCCATCAGCAGTT 1006 Query 929 CTGAAGTCCGTTGCTTAGTCGATGTACCGGGTCAAAAAGTTCCTCCCATTGGAAATGGCG 988 ||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| | Sbjct 1007 CTGAAGTCCGTTGCTTAGTAGATGTACCGGGTCAAAAACTTCCTCCCATTGCAAATGGTG 1066 Query 989 AAATGGCAAAGTATCTGAAAACACGGGTTGCGCCTCAAGTACCAACCGAGGTCCGTGAAG 1048 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1067 AAATGGCAAAGTATCTGAAAACACGGGTTGCGCCTCAAGTACCAACCAAGGTCCGTGAAG 1126 Query 1049 CATTCATCACCGCGGTTGAGAAAGGTAATATCAAAACCATGCCAAACCGAAGCATGCCAG 1108 ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1127 CATTCATCACCGCTGTTGAGAAAGGTAATATCAGAACCATGCCAAACCGAAGCATGCCAG 1186 Query 1109 CTGATCCGATTCCTACTCCTGGAGCTCTTCTTCTAGGTGATGCATTCAACATGAGACATC 1168 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1187 CTGATCCGATTCCTACTCCTGGAGCTCTTCTTCTTGGTGATGCATTCAACATGAGACATC 1246 Query 1169 CTTTAACTGGTGGTGGGATGACCGTTGCATTGGCGGATATCGTTGTACTCCGTGATCTTC 1228 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1247 CTTTAACCGGTGGTGGGATGACCGTTGCATTGGCGGATATAGTTGTACTCCGTGATCTTC 1306 Query 1229 TAACGCCAATTCGCAACCTTAATGACAAAGAAGCTTTGTCTAAGTATATTGAATCTTTTT 1288 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1307 TAAGGCCAATTCGCAACCTTAATGACAAAGAAGCTTTGTCTAAGTATATTGAATCCTTTT 1366 Query 1289 ACACACTGCGAAAACCTGTAGCTTCCACCATTAATACGCTGGCGGACGCGTTGTATATGG 1348 ||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||| || Sbjct 1367 ACACACTACGAAAACCTGTAGCTTCCACCATTAATACATTGGCGGATGCGTTGTATAAGG 1426 Query 1349 TCTTTTTAGCATCTTCGGATGAAGCAAGAACGGAAATGCGTGAAGCTTGCTTCAACTATC 1408 |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 1427 TCTTTTTAGCATCTTCAGATGAAGCAAGAACGGAAATGCGTGAAGCTTGCTTCGACTATC 1486 Query 1409 TTAGCCTTGGAGGTGTTTGCTCATCTGGTCCAGTTGCATTGCTATCTGGTTTAAACCCTC 1468 |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| Sbjct 1487 TTAGCCTTGGAGGTGTTTTCTCATCTGGTCCAGTTGCATTGCTCTCTGGTTTAAACCCTC 1546 Query 1469 GTCCTCTGAGTTTAGTTCTCCACTTCTTTGCTGTGGCGATCTACGCTGTTTGTCGTTTAA 1528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1547 GTCCTCTGAGTTTAGTTCTCCACTTCTTTGCTGTGGCGATCTACGCTGTTTGTCGTTTAA 1606 Query 1529 TGCTACCATTTCCTTCGATTAAAAGCTTTTGGCTTGGAGCTAGGATAATCTCGAGTGCTA 1588 |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 1607 TGCTACCATTTCCTTCGATTGAGAGCTTTTGGCTTGGAGCTAGGATAATCTCGAGTGCTT 1666 Query 1589 CAAGCATCATCTTTCCCATAATCAAAGCTGAGGGAGTTAGGCAAATGTTCTTCCCGCGTA 1648 |||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||| |||| Sbjct 1667 CAAGCATCATCTTTCCAATAATTAAAGCAGAGGGAGTTAGACAAATGTTCTTCCCTCGTA 1726 Query 1649 CTATCGCTGCCATATACCGTACTCCTCCTT 1678 | ||| |||||||||||||| ||||||||| Sbjct 1727 CAATCCCTGCCATATACCGTGCTCCTCCTT 1756 Score = 265 bits (143), Expect = 1e-69 Identities = 174/189 (92%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 1 ATGAAATTATTCGTAATCAAGAACCTTCCAAGATTTCAATTAACTCTTAGATCTTTGCTT 60 |||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||| Sbjct 1 ATGAAACCATTCGTAATCAGGAACCTTCCAAGATTTCAATCAACTCTTAGATCTTCGCTT 60 Query 61 CTCTACACAAATCATCGTCCCTCTTCTCGATTCTCTCTCTCTACTCGTCGATTAACCACC 120 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 61 CTCTACACAAATCATCGCCCCTCTTCTCGATTCTCTCTCTCTACTCGTCGATTCACCACC 120 Query 121 GGAGCCACCTACATTCGCCGCGGGAAAGCAACGGCGGAGCAGAGACACAAA-TGCGCCGC 179 |||||||||||||||||||| ||||||||||||||| ||||| || |||| | | |||| Sbjct 121 GGAGCCACCTACATTCGCCGATGGAAAGCAACGGCGGCGCAGACACTCAAACT-CTCCGC 179 Query 180 CGTGAACTC 188 ||||||||| Sbjct 180 CGTGAACTC 188 > AT4G37760.1 | Symbols: SQE3 | squalene epoxidase 3 | chr4:17743887-17746678 FORWARD LENGTH=2028 Length=2028 Score = 1044 bits (565), Expect = 0.0 Identities = 1148/1423 (81%), Gaps = 66/1423 (5%) Strand=Plus/Plus Query 292 GATGTTATCATCGTCGGAGCTGGTGTTTCCGGTGCCGCTCTTGCTCATACTCTCGGCAAG 351 ||| ||||||| ||||| |||||||| |||| || || ||||||||||| ||||||||| Sbjct 364 GATATTATCATTGTCGGTGCTGGTGTCGCCGGCGCTGCCCTTGCTCATACCCTCGGCAAG 423 Query 352 GAAGGACGAAGAGTTCATGTTATAGAAAGAGATTTGTCTGAGCAAGA-CAGAATTGTTGG 410 |||||| |||||||||| |||||||||||||| || | |||| || | ||||||| || Sbjct 424 GAAGGAAGAAGAGTTCACGTTATAGAAAGAGACTTAACGGAGCCTGATC-GAATTGTCGG 482 Query 411 TGAATTGCTTCAACCTGGTGGTTACTTGAAGTTAATCGAACTTGGACTTGAGGATTGTGT 470 |||||| ||||| ||||||||||||||||||||||||||||| || ||||| |||||||| Sbjct 483 TGAATTACTTCAGCCTGGTGGTTACTTGAAGTTAATCGAACTCGGGCTTGAAGATTGTGT 542 Query 471 GAAGAAGATAGATGCTCA-ACGAGTTCTTGGTTATGTTCTCTTTAAAGATGGGAAACATA 529 |||| | |||||||| || | ||||||||||||||| ||||||||||||||||||||| | Sbjct 543 GAAGGATATAGATGCGCAGA-GAGTTCTTGGTTATGCTCTCTTTAAAGATGGGAAACACA 601 Query 530 CTAAACTTTCTTACCCTTTGGAAAC-GTTTGATTCGGATGTAGCCGGG-AGAAG-TTTCC 586 ||||||| |||||||| |||| | | ||||||||| ||||| | |||| | || ||| | Sbjct 602 CTAAACTCTCTTACCCGTTGG-ATCAGTTTGATTCCGATGTTG-CGGGTCGTAGCTTT-C 658 Query 587 ACAATGGGAGATTTGTGCAGAGAATGCGAGAAAAAGCCGCTACT-CTTTCAAATGTACGA 645 |||||||||||||||||||||| |||||||| ||||| || | ||| | ||||| ||| Sbjct 659 ACAATGGGAGATTTGTGCAGAGGATGCGAGAGAAAGCTTCT-TTACTTCCCAATGTTCGA 717 Query 646 TTGGAACAAGGAACGGTTACGTCGTTGCTTGAAGAAAACGGGACAATCAAAGGGGTTCGA 705 |||| |||||||| || || |||||| | ||||||||||| | ||||||||| |||| | Sbjct 718 ATGGAGCAAGGAACAGTGACATCGTTGGTGGAAGAAAACGGAATAATCAAAGGTGTTCAA 777 Query 706 TACAGGA-CAAAGGA-GGGCAATGAGCTT-AGATCATTTGCTCCTCTCACAATTGTATGT 762 |||| | |||| || || ||| |||||| || ||||||||||||||||| ||||||||| Sbjct 778 TACAAAACCAAA-GATGGCCAA-GAGCTTAAG-TCATTTGCTCCTCTCACTATTGTATGT 834 Query 763 GATGGTTGTTTCTCCAACTTGCGTCGCTCTCTTTGTAAACCTAAGGTGGATAG-GCCATC 821 |||||||||||||||||||||||||| ||||| || |||||||||||||| | |||||| Sbjct 835 GATGGTTGTTTCTCCAACTTGCGTCGATCTCTCTGCAAACCTAAGGTGGAG-GTGCCATC 893 Query 822 TACTTTTGTGGGTCTTGTCTTGGAGAACTGTGAACTTCCATTTGCAAATCACGGGCATGT 881 | ||| || ||||| || |||||||| || ||||| || ||| | || |||||||| || Sbjct 894 CAATTTCGTTGGTCTGGTATTGGAGAATTGCGAACTCCCGTTTCCGAACCACGGGCACGT 953 Query 882 TGTTCTCG-CTGACCCATCTCCCATCTTAATGTATCCCATCAGCAGTTCTGAAGTCCGTT 940 |||||| | | || || || ||||| ||| | ||||| |||||||| || |||||||||| Sbjct 954 TGTTCTTGGC-GATCCGTCACCCATTTTATTCTATCCTATCAGCAGCTCGGAAGTCCGTT 1012 Query 941 GCTTAGTCGATGTACCGGGT-CAAAAAGTTCCTCCCA-TTGGAAATGGCGAAATGGCAAA 998 |||| || |||||||| ||| ||||| ||||| | | ||| || ||| |||||||| | Sbjct 1013 GCTTGGTAGATGTACCAGGTTCAAAAC-TTCCTTC-AGTTGCAAGTGGTGAAATGGCTCA 1070 Query 999 GTATCTGAAAACACGGGTTGCGCCTCAAGTACCAAC-CGAGGTCCGTGAAGCATTCATCA 1057 |||| |||||| |||||| || || |||||| | | || ||||||| || ||||| Sbjct 1071 CCATCTCAAAACAATGGTTGCACCGCAGGTACCACCTC-AGATCCGTGATGCTTTCATTT 1129 Query 1058 CCGCGGTTGAGAAAGGTAATATCAA-AACCATGCCAAACCGAAGCATGCCAGCTGATCCG 1116 | || || || |||||||| || || ||| ||||| ||| ||||||||||||||||||| Sbjct 1130 CTGCAGTCGAAAAAGGTAACAT-AAGAACAATGCCGAACAGAAGCATGCCAGCTGATCCA 1188 Query 1117 ATTCCTACTCCTGGAGCTCTT-CTTCTAGGTGATGCATTCAACATGAGACATCCT-TTAA 1174 |||| ||| ||||||||| || ||| |||||||||| ||||||||| | |||||| ||| Sbjct 1189 ATTCATACACCTGGAGCT-TTGCTTTTAGGTGATGCGTTCAACATGCGCCATCCTCTTA- 1246 Query 1175 CTGGTGGTGGGATGACCGTTGCATTGGCGGATATCGTTGTACTCCGTGATCT-TCT-AAC 1232 |||| ||||| ||||||||||||||| | ||||| || | ||||||||||| | | ||| Sbjct 1247 CTGGAGGTGGTATGACCGTTGCATTGTCTGATATAGTCATCCTCCGTGATCTAT-TGAAC 1305 Query 1233 GCCAATTCG-CAACCTTAATGA-CAAAGAAG-CTTTGTCTAAGTATATTGAATCTTTTTA 1289 || | || | || |||| | |||||| | | || || || || || ||||| || || Sbjct 1306 -CCGCT-CGTCGAC-TTAACCAACAAAGA-GTCCTTATCCAAATACATAGAATCATTCTA 1361 Query 1290 CACACTGCGAAAACCTGTAGCTTCCACCATTAATACGCTGGC-GGACGCG-TTGTATATG 1347 |||| |||| ||||| || ||||| || || ||||| || || || ||| || || | Sbjct 1362 CACATTGCGGAAACCGGTTGCTTCGACTATCAATACACTCGCAGG-CGCTCTT-TACAAA 1419 Query 1348 GTCTTTTTAGCATCTTCGGATGAAGCAAGAA-CGGAAATGCGT-GAAGCTTGCTTCAACT 1405 ||||||||||||||| | || || ||||||| || |||||||| || ||||||||| | | Sbjct 1420 GTCTTTTTAGCATCTCCAGACGATGCAAGAAGCG-AAATGCGTCGA-GCTTGCTTCGATT 1477 Query 1406 ATCTTAGCCTTGGAGGTGTTTGCTCATCTGGTCCAGTTGCATTGCTATCTGGTTTAAACC 1465 |||||||||| ||||| ||||||||||| || || || || |||||||||||||| |||| Sbjct 1478 ATCTTAGCCTCGGAGGGGTTTGCTCATCAGGACCTGTGGCTTTGCTATCTGGTTTGAACC 1537 Query 1466 CTCGTCCTCTGAGT-TTAGTTCTCCACTTCTTTGCTGTGGCGATCTACGCTGTTTGTCGT 1524 | || ||| |||| || ||||| || ||||| || || ||||| | || ||| ||||| Sbjct 1538 CACGACCTATGAGCCTT-GTTCTTCATTTCTTCGCAGTTGCGATTTTCGGGGTTGGTCGT 1596 Query 1525 TTAAT-GCTACCATTTCCT-TC-GATTAAAAGCTTTTGGCTTGGAGCTAGGA-TAATCTC 1580 || | | |||| | ||| || | ||||| | || |||||||||||||| | ||||||| Sbjct 1597 TTGCTTG-TACC-TCTCCCGTCCG-TTAAACGGTTATGGCTTGGAGCTAG-ACTAATCTC 1652 Query 1581 GAGTGCTACAAGCATCATCTTTCCCATAATCAAAGCTGAGGGAGTTAGGCAAATGTTCTT 1640 ||||||| || | ||||| ||||| ||||| ||||| || || || |||||||||||||| Sbjct 1653 GAGTGCTTCAGGGATCATATTTCCAATAATAAAAGCAGAAGGTGTGAGGCAAATGTTCTT 1712 Query 1641 CCCGCGTACTAT-CGCTGCCATATACCGTA-CTCCTCCTTCTC 1681 ||| || ||||| | ||||||| ||| | | |||||||| ||| Sbjct 1713 CCCTCGAACTATTC-CTGCCATTTACAG-AGCTCCTCCTACTC 1753 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83332904700 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5