BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899596

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G55160.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   183    8e-46


> AT1G55160.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 22 plant 
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT2G19530.1); 
Has 63 Blast hits to 63 proteins in 14 species: 
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; 
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 
chr1:20578406-20580010 FORWARD LENGTH=919
Length=919

 Score =  183 bits (99),  Expect = 8e-46
 Identities = 163/193 (84%), Gaps = 8/193 (4%)
 Strand=Plus/Plus

Query  203  GTTATCttttttttA-ACATTAAGAAAGAA-GACATAGAGT-TTGTAAACGAAAAGACAG  259
            ||||||| || |||| | | ||||||| || ||| |||| |  ||||   ||| |||| |
Sbjct  405  GTTATCTGTTCTTTAGA-ACTAAGAAA-AAGGACCTAGA-TCCTGTAGTTGAAGAGACGG  461

Query  260  CTGCTAAATATG-GTTTAGTTGCAGCTCCTATTATTGTGGAAAAGACTGCGTCTTCCACA  318
            |||||||||  | ||| ||||||||||||| ||| ||||||||| |||  ||||||||||
Sbjct  462  CTGCTAAAT-CGAGTTCAGTTGCAGCTCCTGTTACTGTGGAAAAAACTTTGTCTTCCACA  520

Query  319  ATGGTTGCGGAGCCAGTGGTGGTCAAGGCATGTGAGCCAATTCTGGAGAAACAACAACGT  378
             ||||||| |||||||||||| |||||||| |||||||||||| ||||||||||||||||
Sbjct  521  GTGGTTGCAGAGCCAGTGGTGATCAAGGCACGTGAGCCAATTCCGGAGAAACAACAACGT  580

Query  379  GAGCTCTTCAAAT  391
            |||||||||||||
Sbjct  581  GAGCTCTTCAAAT  593



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18548799381


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5