BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899618

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G23110.1 | Symbols:  | Late embryogenesis abundant protein, ...   399    5e-111


> AT2G23110.1 | Symbols:  | Late embryogenesis abundant protein, 
group 6 | chr2:9840456-9841046 FORWARD LENGTH=591
Length=591

 Score =  399 bits (216),  Expect = 5e-111
 Identities = 258/279 (92%), Gaps = 0/279 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGGATAAGAAAAAGCCACCAACGACGGAGCAACAAGAGAAAGAAGTTAAAAACGAC  60
            ||||||||| ||||||||||||||||||| |||||| ||| |||||||||||||||||||
Sbjct  97   ATGGAGGATCAGAAAAAGCCACCAACGACCGAGCAAGAAGTGAAAGAAGTTAAAAACGAC  156

Query  61   GACGTTGAGTCTATCAAGAGCCCATATTTGGATTATGATAACTTGGAAGATTACAAGATG  120
            ||| | ||||||||||||| |||||| ||||| |||||||||||||||||||||||||||
Sbjct  157  GACCTCGAGTCTATCAAGACCCCATACTTGGACTATGATAACTTGGAAGATTACAAGATG  216

Query  121  AAAGGTTACGGAGCACATGGCCACCAAGAACCTAAGCTTGGCATGGGAGGTGGAGCCACC  180
            ||||||||||||||||| ||||||||||| ||||| || || ||||||||||||||||||
Sbjct  217  AAAGGTTACGGAGCACAAGGCCACCAAGAGCCTAAACTCGGTATGGGAGGTGGAGCCACC  276

Query  181  GATGCTCCTACTCCTTCAGGGGGTCTTGGCCGCGGTGGAGGCGCTGCATCGACGGATCTT  240
            |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct  277  GATGCTCCCACTCCTTCAGGCGGTCTTGGACGCGGTGGAGGCGCTGCATCGACGGATCTT  336

Query  241  TCTTCTACCGGTTCGATTAACCATCAGGGAGTTCCGTGA  279
            |||||||||| | ||||||||| |||||| |||||||||
Sbjct  337  TCTTCTACCGATGCGATTAACCGTCAGGGCGTTCCGTGA  375



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12818275995


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5