BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899620
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23130.1 | Symbols: AGP17, ATAGP17 | arabinogalactan protein... 501 3e-141
> AT2G23130.1 | Symbols: AGP17, ATAGP17 | arabinogalactan protein
17 | chr2:9844350-9845385 FORWARD LENGTH=818
Length=818
Score = 501 bits (271), Expect = 3e-141
Identities = 477/570 (84%), Gaps = 39/570 (7%)
Strand=Plus/Plus
Query 1 ATGACTCGCAAAATTCTCTTAACAGTTACATTGATCTGCATTGTATCTC-TCGGTGTCGG 59
||||||||||| |||||||| || |||||||||||||||||||| | || || |||||
Sbjct 62 ATGACTCGCAATATTCTCTTGACGGTTACATTGATCTGCATTGT-TTTCATCACCGTCGG 120
Query 60 TGGCCAATCTCCGGCCACCGCACCGAGCCATTCTCCTTCTATATCTCCTCAAAAGCCTAA 119
|||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct 121 TGGCCAATCTCCGGCCACCGCACCGATCCATTCTCCTTCTACATCTCCTCATAAGCCTAA 180
Query 120 AGCCACATCTCCCGCCATTTCTCCATCTCCGGAATTAACTCCC-A--CGACGGAGGCTCC 176
| ||||||||||||||||||||||| || | | | | || | | |||||||||||
Sbjct 181 ACCCACATCTCCCGCCATTTCTCCAGCTGCTCCA--A-CGCCGGAATCCACGGAGGCTCC 237
Query 177 GACGCAGACTCCAGTAGAACCACCCGTCGAGGCTCCTCCTTCTCCTACACCTGAGGCT-- 234
| || ||||||| |||||| |||| || ||||||||||||||||||||||||| ||
Sbjct 238 GGCGAAGACTCCGGTAGAAGCACCTGTAGAGGCTCCTCCTTCTCCTACACCTGCTTCTAC 297
Query 235 ---TC---T-TCTCCGCCTGGTCCTTCACCGGAGGCTGATACACCTTCTGCTCCGGTGGA 287
|| | |||||||| | ||||||||||||||||||||| ||||| ||||||| | |
Sbjct 298 ACCTCAGATCTCTCCGCCCGCTCCTTCACCGGAGGCTGATACTCCTTCAGCTCCGGAG-A 356
Query 288 T-GCGCCAACAGCTGACGTCCCGGCTCCAGCTCCGAGCAAA-CATAAGAAGAAG-C---G 341
| || || ||||||| || ||||||||||||| || |||| |||||||||||| | |
Sbjct 357 TTGCACCTTCAGCTGATGTTCCGGCTCCAGCTCTGA-CAAAACATAAGAAGAAGACAAAG 415
Query 342 -----TAAGACCGCCCCGGCTCCCGGACCAGCTTCGGAGATTTTAAGCCCGCCTGCTCCG 396
||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 416 AAGCATAAGACCGCTCCGGCTCCTGGACCAGCTTCGGAGCTTTTAAGCCCGCCTGCTCCG 475
Query 397 CCCGGGGAAGCTCCTGGTCCTGGACCAAGTGATGCTTTCTCCCCCACCGCCGACGATCAG 456
||||| ||||||||||||||||||||||| ||||||||||| || |||| |||||||||
Sbjct 476 CCCGGAGAAGCTCCTGGTCCTGGACCAAGCGATGCTTTCTCTCCTGCCGCTGACGATCAG 535
Query 457 AGCGGAGCAGAAAAAAGAAGTGT-G--ATACAAAATGTGATGGTGGGAGCTGTGGCAATC 513
||||||||| ||| || |||||| | ||||||| || | ||| | ||||| |||||||
Sbjct 536 AGCGGAGCACAAAGAATAAGTGTTGTGATACAAA-TG-G-TGG-G--AGCTGCGGCAATC 589
Query 514 GCATGGCCTCTACTTGCTCTAGCCTTCTAA 543
|||||| ||||||||| |||||||||||||
Sbjct 590 GCATGGTCTCTACTTGTTCTAGCCTTCTAA 619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26021288146
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5