BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899623
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23142.1 | Symbols: | Plant self-incompatibility protein S1... 424 8e-118
AT2G23148.1 | Symbols: | Plant self-incompatibility protein S1... 368 4e-101
> AT2G23142.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr2:9850176-9850619 FORWARD LENGTH=444
Length=444
Score = 424 bits (229), Expect = 8e-118
Identities = 333/381 (87%), Gaps = 15/381 (4%)
Strand=Plus/Plus
Query 283 GGATTGAGTAATGC-AAAGTTCAACGaaaaaaaCTCTGTAATTTTTAAGAATGCTCTTGG 341
||||||| |||||| ||| ||||||||||||||||| ||||||||||||| | |||||||
Sbjct 46 GGATTGAATAATGCGAAA-TTCAACGAAAAAAACTCCGTAATTTTTAAGAGTTCTCTTGG 104
Query 342 TCCTAAAAAAGTTCTCAGGATTTC-TTGTACATCAG-ACAACGACGAAATAGGCTACATT 399
||| |||||| ||||||||| ||| ||||||||||| || ||||||| | | |||| ||
Sbjct 105 TCCGAAAAAACTTCTCAGGA-TTCATTGTACATCAGAAC-ACGACGACACCGACTACGTT 162
Query 400 TTCTTGAAACGTGGACAAATC-TAC-CAATTTAGTTTTCATGATAGTGTTTTCAAAACCA 457
| | ||| || |||||||| | ||| | ||| ||||||||||||||||| || ||||| |
Sbjct 163 TACCTGAGACATGGACAAA-CTTACGC-ATTCAGTTTTCATGATAGTGTCTTGAAAACTA 220
Query 458 AATTTGATTGTGAGTTATCG-AAGGGAAGTGGTGGTTTTTATGATTACAATTTTTATGCA 516
|||||||||||||||| | || |||| || ||| |||| ||||||| |||||||||
Sbjct 221 TATTTGATTGTGAGTTAAAGCAA-GGAA---GTAGTTATTATAATTACAACTTTTATGCA 276
Query 517 AAATTTAGGGCATATACAGGTGGCGGTCTCATAGTTCACTACGGTAAAAAGAACTTTTGG 576
| |||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 277 AGATTTAGGGCATATAAAGGTGGAGGTCTGATAGTTCACTACGGTAAAAAGAACTTTTGG 336
Query 577 GAAGCTAGAGAAGATGGTATTTACTTCACACATGGTAAAGAAATACCTAAATTAGAGTAT 636
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 337 GATGCTAGAGAAGATGGTATTTACTTCACACATGGTAAAGAAACACCTAAATTAGAGTAT 396
Query 637 AAATGGATCCCCGGAGATCCC 657
|||||||||||||| ||||||
Sbjct 397 AAATGGATCCCCGGGGATCCC 417
> AT2G23148.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr2:9853618-9854156 FORWARD LENGTH=539
Length=539
Score = 368 bits (199), Expect = 4e-101
Identities = 320/375 (85%), Gaps = 21/375 (6%)
Strand=Plus/Plus
Query 283 GGATTGAGTAATGCAAAGTTCA-ACGaaaaaaaCTCTGTAATTTTTAAGAATGCTCTTGG 341
|||| ||||||||| ||||||| | |||||||| |||||| ||||||| ||| |||||||
Sbjct 60 GGATCGAGTAATGCGAAGTTCAGA-GAAAAAAATTCTGTAGTTTTTAAAAATTCTCTTGG 118
Query 342 TCCT-AAAAAAGTTCTCAGGATTTC-TTGTACATCAGACA-ACGACGAAATAGGCTA-CA 397
| | ||||| ||||||| || ||| |||||||||| | | ||||||| ||||||| ||
Sbjct 119 T-GTGAAAAACGTTCTCAAGA-TTCATTGTACATCA-AAAGACGACGACCTAGGCTACCA 175
Query 398 TTTTCTTGAAACGT-G-G-ACAAATCTACCAATTTAGTTTTCATGATAGTGTTTTCAAAA 454
| | |||| || | | | |||||||||| ||||| ||||||||||||||||||| ||||
Sbjct 176 CTAT-TTGAGACCTGGAGTACAAATCTACGAATTTCGTTTTCATGATAGTGTTTTGAAAA 234
Query 455 CCAAATTTGATTGTGAGTTATCGAAGGGAAGTGGTGGTTTTTATGATTACAATTTTTATG 514
| ||||||||||||||||||| | |||| | |||| | || |||||| |||||||
Sbjct 235 CTAAATTTGATTGTGAGTTATGGCAGGG-A--CGTGG-TCCTA--CTTACAAGTTTTATG 288
Query 515 CAAAATTTAGGGCATATACAGGTGGCGGTCTCATAGTTCACTACGGTAAAAAGAACT-TT 573
|||| ||||||||||||| | |||||||||| |||| |||||||||||||||||| | ||
Sbjct 289 CAAATTTTAGGGCATATAAAAGTGGCGGTCTGATAGCTCACTACGGTAAAAAGAA-TATT 347
Query 574 TGGGAAGCTAGAGAAGATGGTATTTACTTCACACATGGTAAAGAAATACCTAAATTAGAG 633
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 348 TGGGAAGCTAGAGAAGATGGTATTTACTTCACACATGGTAAAGAAATTCCTAAATTAGAG 407
Query 634 TATAAATGGATCCCC 648
|||||||||| ||||
Sbjct 408 TATAAATGGAGCCCC 422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33556410196
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5