BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg899624
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23150.1 | Symbols: NRAMP3, ATNRAMP3 | natural resistance-as... 2394 0.0
> AT2G23150.1 | Symbols: NRAMP3, ATNRAMP3 | natural resistance-associated
macrophage protein 3 | chr2:9856192-9858574 REVERSE
LENGTH=1769
Length=1769
Score = 2394 bits (1296), Expect = 0.0
Identities = 1454/1531 (95%), Gaps = 8/1531 (1%)
Strand=Plus/Plus
Query 1 ATGTCACAACTCGAGAACAACGAGCCACTTCTGATCAAC---GAAGAAGAAGAAGAAACA 57
||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 10 ATGCCACAACTCGAGAACAACGAGCCACTTCTAATCAACGAGGAAGAAGAAGAAGAAACA 69
Query 58 GCGTACGATGAAACAGAGATGGTACACATCGTGAGAAACG-A-A-GAGGACGATCTAGAA 114
||||||||||||||||||| |||||| ||||| ||||||| | | |||||||||||||||
Sbjct 70 GCGTACGATGAAACAGAGAAGGTACATATCGTAAGAAACGAAGAGGAGGACGATCTAGAA 129
Query 115 CACGGCGTCGGATGCGGCGGCGCACCACCGTTCTCATGGAAGAAGCTCTGGTTATTCACC 174
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 130 CACGGCGTCGGATGCGGCGGCGCACCACCGTTCTCATGGAAGAAGCTATGGTTATTCACC 189
Query 175 GGACCAGGGTTTTTAATGAGCATTGCGTTTCTCGATCCAGGGAATCTCGAAGGAGATCTT 234
||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 190 GGACCTGGGTTTTTAATGAGCATTGCGTTTTTAGATCCAGGGAATCTCGAAGGAGATCTT 249
Query 235 CAAGCCGGTGCGATTGCTGGGTACTCGTTGTTATGGCTTCTTATGTGGGCAACAGCGATG 294
|||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 250 CAAGCCGGTGCGGTTGCTGGGTACTCTTTGTTATGGCTTCTCATGTGGGCAACAGCAATG 309
Query 295 GGTCTATTGGTTCAGCTTTTGTCTGCGAGGCTTGGTGTTGCGACAGGTCGTCACTTAGCT 354
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 310 GGTCTTTTGGTTCAGCTTTTGTCGGCTAGGCTTGGTGTTGCGACAGGTCGTCACTTAGCT 369
Query 355 GAGCTTTGTCGTGATGAATATCCGACTTGGGCAAGAATGGTTTTGTGGGTTATGGCTGAA 414
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 370 GAGCTTTGTCGTGATGAGTATCCTACTTGGGCAAGAATGGTTTTGTGGGTTATGGCTGAA 429
Query 415 TTGGCTTTGATTGGAGCTGATATTCAAGAAGTTATTGGTAGTGCTATTGCTATTAAGATT 474
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 430 TTGGCTTTGATTGGATCTGATATTCAAGAAGTTATTGGTAGTGCTATTGCTATCAAGATT 489
Query 475 TTGAGTAATGGGATTTTGCCTCTTTGGGCTGGTGTTCTTATCACTGCTCTTGATTGTTTC 534
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 490 TTGAGTAATGGGATTTTGCCTCTTTGGGCTGGTGTTGTTATTACTGCTCTTGATTGTTTC 549
Query 535 GTCTTCTTGTTTCTTGAGAATTACGGAATCAGGAAGCTCGAGGCGGTTTTTGCGGTTCTT 594
|||||||||||||||||||| |||||||| |||||||||||||| || ||||| ||||||
Sbjct 550 GTCTTCTTGTTTCTTGAGAACTACGGAATAAGGAAGCTCGAGGCTGTGTTTGCAGTTCTT 609
Query 595 ATTGCTACAATGGGAGTCTCATTCGCTTGGATGTTTGGTCAAGCTAAGCCAAGTGGCTCT 654
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 ATCGCTACAATGGGAGTCTCATTCGCTTGGATGTTTGGTCAAGCTAAGCCAAGTGGCTCT 669
Query 655 GAACTTCTCATTGGGATATTGGTACCGAAACTGAGTTCAAGAACGATACAGAAAGCAGTT 714
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 GAGCTTCTCATTGGGATTTTGGTACCGAAACTGAGTTCAAGAACGATACAGAAAGCAGTT 729
Query 715 GGAGTTGTGGGTTGTATTATAATGCCCCACAATGTGTTTCTTCACTCAGCTCTTGTTCAA 774
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 730 GGAGTTGTGGGTTGCATTATAATGCCACACAATGTGTTTCTTCACTCAGCTCTTGTTCAA 789
Query 775 TCTAGAGAAGTCGATAAACGACAGAAATACCGAGTTCAAGAAGCGCTAAACTACTACACC 834
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 790 TCTAGAGAAGTCGATAAACGACAGAAATACCGAGTCCAAGAAGCGCTAAACTACTACACA 849
Query 835 ATTGAATCAACAATTGCTCTTTTTGTCTCCTTTATGATCAATCTGTTTGTCACAACGGTT 894
|| ||||| |||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 850 ATAGAATCCACAATTGCTCTTTTCATCTCCTTTTTGATCAATCTGTTTGTCACAACTGTT 909
Query 895 TTCGCCAAAGGGTTTTATAATACTGACCTCGCCGATAGCATTGGTTTGGTTAACGCGGGA 954
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 910 TTCGCCAAAGGGTTTTATAATACTGACCTCGCCAATAGCATCGGTTTGGTTAACGCGGGA 969
Query 955 CAGTATCTTCAGGAGAAATATGGAGGCGGTGTGTTCCCGATACTATACATTTGGGCAATC 1014
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 970 CAGTATCTTCAGGAGAAATATGGAGGCGGTGTGTTCCCGATACTATACATTTGGGCGATC 1029
Query 1015 GGGCTATTAGCTGCTGGACAAAGCAGCACTATTACTGGTACATACGCGGGACAATTCATC 1074
||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||
Sbjct 1030 GGGCTATTAGCTGCTGGCCAAAGCAGCACTATTACCGGTACATATGCGGGACAGTTCATA 1089
Query 1075 ATGGGCGGGTTTCTTAATTTCAGAATGAAGAAATGGTTGAGAGCTTTGATCACACGAAGC 1134
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1090 ATGGGCGGGTTTCTTAATTTCAAAATGAAGAAATGGTTGAGAGCTTTGATCACACGAAGC 1149
Query 1135 TGCGCAATCATTCCAACTATTATCGTTGCTCTAGTGTTTAATTCATCGGAAGCTACACTC 1194
||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1150 TGCGCTATCATTCCAACTATTATCGTTGCGCTAGTGTTTGATTCATCGGAAGCTACACTC 1209
Query 1195 GATGTCTTAAATGAGTGGCTTAACGTGCTTCAATCCGTTCAAATTCCCTTTGCACTCATT 1254
||||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct 1210 GATGTCTTAAACGAGTGGCTTAACGTGCTTCAGTCCATTCAAATCCCCTTTGCACTCATT 1269
Query 1255 CCCTTGCTGTGTTTGGTCTCCAAAGAACAAATCATGGGCAGCTTCAAAATCGGTCCTTTG 1314
||||| || |||||||||||||| |||||||||||||| |||||||| || |||||||||
Sbjct 1270 CCCTTACTTTGTTTGGTCTCCAAGGAACAAATCATGGGTAGCTTCAAGATTGGTCCTTTG 1329
Query 1315 TACAAGACAATTGCGTGGCTTGTTGCTGCGCTCGTGATAATGATCAACGGTTATCTATTG 1374
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1330 TACAAGACAATCGCGTGGCTTGTTGCTGCGCTCGTGATAATGATCAACGGTTATCTTTTG 1389
Query 1375 TTGGAGTTCTTCTCCAATGAGGTTAGTGGCATAGTCTATACCGGTTTTGTGACTGTGTTC 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1390 TTGGAGTTCTTCTCCAATGAGGTTAGTGGCATAGTCTATACCGGTTTTGTGACACTGTTC 1449
Query 1435 ACAGCTTCGTATGGTGCATTCATCCTCTACCTCATTGCTCGTGGCATCACTTTCACTCAT 1494
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1450 ACAGCTTCTTATGGTGCATTCATCCTCTACCTCATTGCTCGTGGCATCACTTTCACTCCT 1509
Query 1495 TGGC-GATTCAAAGCGGAGTCTAGTAATTGA 1524
|||| | |||||||||||||||||| |||||
Sbjct 1510 TGGCCG-TTCAAAGCGGAGTCTAGTCATTGA 1539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75200416410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5