BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg899647

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G23348.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   261    2e-69


> AT2G23348.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; Has 3 Blast hits to 3 
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr2:9941189-9942814 REVERSE LENGTH=473
Length=473

 Score =  261 bits (141),  Expect = 2e-69
 Identities = 203/232 (88%), Gaps = 8/232 (3%)
 Strand=Plus/Plus

Query  3    ACTTCTATGCTCAAGTAATACTTTCCTGCTTGTGGCTTTTCGAACAATTTATGTCTCTGT  62
            ||||||||||||| || |||| ||||| ||||||||||||||||||||||||||||||||
Sbjct  131  ACTTCTATGCTCAGGTTATACGTTCCTACTTGTGGCTTTTCGAACAATTTATGTCTCTGT  190

Query  63   TATCTCACTAACTTATGAGGCTTATGCGGATATTTCAGATTATAACTTTGATGGCTTTGT  122
            ||| ||| | ||| |||||||||||| ||||||||||||||||| ||||| | | ||| |
Sbjct  191  TATATCATTGACTCATGAGGCTTATGAGGATATTTCAGATTATAGCTTTGTTAGATTT-T  249

Query  123  -TT-TCACTAGATGTCATTGGCATTTACTAATCCGGTTCTCATGTGATGGATCTGTGATA  180
             || | | ||  || |||||||||| |||  ||||||||||||||||||||| |||||||
Sbjct  250  CTTATAA-TATTTGGCATTGGCATTCACTTGTCCGGTTCTCATGTGATGGATATGTGATA  308

Query  181  GCATGGATTGAAAATCTTGAAGCTTTTG-TTATGGTTTTCAGT-CTAATCTA  230
            ||||||||||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct  309  GCATGGATTGAAA-TCTTGAAGCTTTTGGTTATGGTTTTC-GTTCTAATCTA  358



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10405424043


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5